Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1702 ATGTCATACGACCAGAGGACTTCTCAGTGGCGGTCAGGGAGTGAGCCTGCGAGCAAGAAGCCAAGGAATTCGTCGCAGGACAGTGGTGGAAACGGGTCAAACCGGTCAAAGGTGATTGGGAAGATGTTCTTCAAGACTAAGCTGTGCTGCAAGTTCCGTGCTGGCACCTGCCCTTACATCAACAACTGCAATTTCGCTCACAGTGTTGAGGAGCTCCAGCGCCCGCCCCCCAATTGGCAGGAGATTGTGGCTGCCCACGAGGAGGAGAAGGCCTCCACTGCCACAACCCCCTCTGAGCCCACTCCGCCCAGGGAGGAGTACCAGATTCCCATACTCTCATCCTCCAACTTCGGTGGGGATATGTCCCAGAGATCTTATAAGGGACGCCATTGCAAGAAGTTCTACACTGAAGAAGGCTGCCCCTATGGGGACAGTTGCACCTTCCTTCATGATGAGCAGTCCAAGAATCGCGAGAGTGTGGCTATAAGTTTAGGCCCTGGTGGATATGGTGGTGGTGGTGGTAGTGGTGGGGGTAGTACTTCTAGTGCTGGTGGTGTAGGTGGCAATGGAAATGGACCTAATGCGAAGCCTTCCAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACCGGGTATTGCCCTTTTGGTAGCAAATGCCATTTCGCTCATGGTTCTACAGAATTGCACAGATATGGAGGTGGGCTTATGGAAGGGGAAAATAGAGAGAGTGTGTCGATTGCGGCTCCGGACACAAAACAGGGAGTAGTAGTAGTCGCAGCTTCAAAAACTGCTGCTGATAATGTGGTGGCATCAGTTACTCCAGCTGCTCATTCTGATGTGTATCATCATGTTGGAGTTCCTTCACAAAGGCCTTCGATTGTGATTCAGAGGCCGGGACAGAGAGCTCTTCACAAGTGGAAAGGTCCTGATAAAATCAGTAGGATATATGGTGATTGGATTGATGAAATTGAATAG 978 0.5082 MSYDQRTSQWRSGSEPASKKPRNSSQDSGGNGSNRSKVIGKMFFKTKLCCKFRAGTCPYINNCNFAHSVEELQRPPPNWQEIVAAHEEEKASTATTPSEPTPPREEYQIPILSSSNFGGDMSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGSGGGSTSSAGGVGGNGNGPNAKPSNWKTRICNKWEMTGYCPFGSKCHFAHGSTELHRYGGGLMEGENRESVSIAAPDTKQGVVVVAASKTAADNVVASVTPAAHSDVYHHVGVPSQRPSIVIQRPGQRALHKWKGPDKISRIYGDWIDEIE* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1702 325 MobiDBLite consensus disorder prediction 1 35 - -
Aev02g1702 325 ProSiteProfiles Zinc finger C3H1-type profile. 43 70 IPR000571 GO:0046872
Aev02g1702 325 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 322 IPR045877 GO:0003729
Aev02g1702 325 MobiDBLite consensus disorder prediction 1 37 - -
Aev02g1702 325 SUPERFAMILY CCCH zinc finger 196 230 IPR036855 GO:0046872
Aev02g1702 325 SMART c3hfinal6 43 69 IPR000571 GO:0046872
Aev02g1702 325 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Aev02g1702 325 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Aev02g1702 325 Pfam CCCH-type zinc finger 129 151 IPR041367 -
Aev02g1702 325 SUPERFAMILY CCCH zinc finger 40 73 IPR036855 GO:0046872
Aev02g1702 325 MobiDBLite consensus disorder prediction 175 199 - -
Aev02g1702 325 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 225 IPR000571 GO:0046872
Aev02g1702 325 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 68 IPR000571 GO:0046872
Aev02g1702 325 Gene3D - 119 165 - -
Aev02g1702 325 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 3 322 - -
Aev02g1702 325 MobiDBLite consensus disorder prediction 161 199 - -
Aev02g1702 325 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Aev02g1702 325 SUPERFAMILY CCCH zinc finger 124 153 IPR036855 GO:0046872
Aev02g1702 325 Gene3D - 39 74 - -
Aev02g1702 325 Gene3D - 194 231 - -
Aev02g1702 325 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1702 Aev-Chr2 18719223 18722699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1702 201 229 C3H Transcription Factor Family AT1G68200 62.069 5.81e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev02g1702 zf-CCCH 7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1702 - - gmx:100788208 455.677