Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1289 ATGTCAAGTAGCAGGAACACTCATTGGTGTTATAGTTGCCGGAGGCCAGTTCGACTTGGACGGAGAGATACGGCTTGTCCTAGCTGTGATGGGGGATTCATTCAGGAACTTAATGATATGGTGGATATTAACCCTCTAGAATTCCTTGGACTTGATAACAATGAAGAACATGACCAAAGATTCGGACTCATGGAAACATTCTCAGCCTTTATGAGGCAACGAATGGCAGATAGAAGTCGTGGCAATTATATCCGGGCACAGTCAGATTCAATTCCTGAACACAGTCCAGGTTTTGCTCCTTTGTTGATCTTTGGTGGTCAAATTCCTTTCAGATTGTCTGAACATGGTGGTGGCTTTGAAGCTCTATTTCAAGGGACTCCAGGAATCGGTCTAACACGAGGTAACACAGGTGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGCTCTCAGCTACTAGCCGGCAAGGTCCCCTACCTGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAGATCACACAGAGGCATCTTCGCTCAGATTCACATTGTCCAGTATGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGTAACCATATATATCACTCAGATTGTATTGTTCCGTGGTTAGTCCAGCATAACTCCTGCCCCGTTTGCCGCCAAGAACTGCCACCTCAGGCATTGAGTAGTGGTCGTCGCGGCTTGAACAGCCGAAGCAGAAGCAGTTTTAGTAGCAGTTCCAATGGTAGTAGTGGTAGGGAGAACCAGATAAGGCGAAATCCGTTCTCCTTTTTGTGGCCTTTCCGTGCATCTAATTCAAGTTCAAGCAGCAATGATAGAGCAACTGCAAGCAGCACGCCAACAGCACCATCATTCCCTGATAATAGTCATCACACGGGATATTCTGGATGGCCATTTGAATGA 948 0.4568 MSSSRNTHWCYSCRRPVRLGRRDTACPSCDGGFIQELNDMVDINPLEFLGLDNNEEHDQRFGLMETFSAFMRQRMADRSRGNYIRAQSDSIPEHSPGFAPLLIFGGQIPFRLSEHGGGFEALFQGTPGIGLTRGNTGDYFIGPGLEELFEQLSATSRQGPLPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPQALSSGRRGLNSRSRSSFSSSSNGSSGRENQIRRNPFSFLWPFRASNSSSSSNDRATASSTPTAPSFPDNSHHTGYSGWPFE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1289 315 MobiDBLite consensus disorder prediction 279 306 - -
Aev02g1289 315 CDD RING-H2_RNF126_like 187 228 - -
Aev02g1289 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Aev02g1289 315 Pfam Ring finger domain 186 228 IPR001841 -
Aev02g1289 315 MobiDBLite consensus disorder prediction 279 315 - -
Aev02g1289 315 MobiDBLite consensus disorder prediction 238 264 - -
Aev02g1289 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 295 - -
Aev02g1289 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 295 - -
Aev02g1289 315 SUPERFAMILY RING/U-box 167 234 - -
Aev02g1289 315 MobiDBLite consensus disorder prediction 234 264 - -
Aev02g1289 315 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Aev02g1289 315 SMART ring_2 187 227 IPR001841 -
Aev02g1289 315 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1289 Aev-Chr2 13626638 13627585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1289 122 267 C3H Transcription Factor Family AT5G01980 39.474 1.36e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1289 K11982 - gmx:100787523 488.034