Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1280 ATGTGCAATGGGTCAACCTTGAAGCATTTTCGGAGAAGAAGATTCGAGCCCAGAGCCATCAGGGCAGGTTACGTTAGCTCACTTCTGAGGAGGGCAAATGAAGATTCTAAGTCTGGGGACCCAGATGGAGGTTTATATACTACTGCCATACAATCTTCCTCATGCTTCAATATTTGGGATCCGGGAGTGATGGAGGCCCTTGGTTCTGTTGATGAACTCTTGGATTTCTCATCTGACATAGCTGAGGATGATGATGATGATGACAAACCTAGGAAAGGCTTTCCTTCTCATAACCCAAAATGCAATGATCCACCGACATTTAACCCATTGGACCTGGTTGTTCCTAACCATTCATTCTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCAAACAAAGATGCATTTCCTGCGGTTGAAACATTTGTTGACATAACAACCATTCAACCTGGCATATCGAAGCACCAAGGGGCAGCCTCAGTGCTTGAATACAGCACAAGCAGTAGCAACAGTAATAACAGCACTAACAGCATTACCCTTTTAAACGGCTATGATCACCTGAAGGTCCCTGTCCGTGCACGGAGCAAGTGCCGCAGTAGGCGCCGCCCAGGCATTCTTGAAATCTCTTGTCAACAATACTGGTGGAGACTACCGAGCAGCGAAACTTCCAAAACAGAAGTGATAAAAATCCCAACCATTGGGCGGAAATGTCAGCACTGTCGAGCTGAAAAAACTCCTCAATGGCGGGCAGGTCCACTTGGGCCAAAAACACTTTGTAATGCGTGCGGGGTTCGGTTTAAGTCTGGCCGACTTGTCCCAGAGTACCGTCCTGCGAGTAGCCCAACTTTTCGTAGTGAATTGCATTCTAATTCCCATAGGAAGATAATGGAAATGAGGAGGCAGAAGCAAATTGGAATGACTTGA 924 0.4643 MCNGSTLKHFRRRRFEPRAIRAGYVSSLLRRANEDSKSGDPDGGLYTTAIQSSSCFNIWDPGVMEALGSVDELLDFSSDIAEDDDDDDKPRKGFPSHNPKCNDPPTFNPLDLVVPNHSFSEFAEEELEWLSNKDAFPAVETFVDITTIQPGISKHQGAASVLEYSTSSSNSNNSTNSITLLNGYDHLKVPVRARSKCRSRRRPGILEISCQQYWWRLPSSETSKTEVIKIPTIGRKCQHCRAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSELHSNSHRKIMEMRRQKQIGMT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1280 307 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Aev02g1280 307 Gene3D - 232 303 IPR013088 GO:0006355|GO:0008270
Aev02g1280 307 MobiDBLite consensus disorder prediction 80 107 - -
Aev02g1280 307 PANTHER GATA TRANSCRIPTION FACTOR 70 303 - -
Aev02g1280 307 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Aev02g1280 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 294 - -
Aev02g1280 307 PANTHER GATA TRANSCRIPTION FACTOR 1 70 303 - -
Aev02g1280 307 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Aev02g1280 307 CDD ZnF_GATA 236 284 IPR000679 GO:0006355|GO:0043565
Aev02g1280 307 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1280 Aev-Chr2 13548376 13553249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1280 233 305 C2C2-Gata Transcription Factor Family AT3G24050 84.932 2.92e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aev02g1280 GATA 5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1280 - - gmx:100784527 344.354