Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1275 ATGGCGTCCCGAAAGGGTGACAACCCTCACTCCGGTGACGGTGCCAGTCCCGGGAAAATCTTCATTGGAGGGCTAGCCAAAGACACCACCTTAGATTCGTTCGTTAAGTACTTTGAGAGGTACGGGGAGATAACGGACTCGGTGATCATGAGGGATCGGCATACGGGTCGACCAAGAGGTTTTGGGTTCATCACCTACGCTGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTCATCAATGGCAAGCAGGTTGAGATCAAAAGGACTATTCCAAAAGGTTCATCACAAGCTAATGACTTCAAAACAAAAAAGATTTTTGTTGGTGGTATTCCAACATCAGTGACTGAAGATGAGTTAAAAGACTTCTTCTCTAAGTATGGGAATGTTGTGGAACATGAGATTATACGTGATCATGCTACAAAGCGTTCCCGGGGTTTTGGATTTATAGTTTATGATAATGACAAGGTTGTTGATAATATGTTGGCAGATGGGAATATGCTTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGGTTCTCTTCCTCCATTTGCTAGTGACTCTAGGACTCTTTCTTACAATGATGGTTTCGGTGGATTTGGTGATTCGTATGGAAGTTTTGCTAGTAGCGGTTATGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGTGGTAGACTTGGAAGTTATGGTGGATATGGAGGCGGAGATGATTTTGGTGGTAGTTTTGGTGGGTACGGTGGTGTTGGTGGTGGTGCTGGGGGTGGCTATGCTGGTTATCGAGCTGAATCGTCATTTGGCTACTCTAGTCGCTATGGTTCCTACATGGGGGGCCTTGGTGGTGGATATGGTAGTGGTGGCTTAGGTGTATATGGACGTGGTAGTGGCGCCTATGGAAGCTATGGTGGTCCAGGCACTGGCACAGGTTATGAATCAGGACCTGGTGCTGGTTATGGTGGGGTAGGAGGAGGACTGTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGATAG 1068 0.4691 MASRKGDNPHSGDGASPGKIFIGGLAKDTTLDSFVKYFERYGEITDSVIMRDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVTEDELKDFFSKYGNVVEHEIIRDHATKRSRGFGFIVYDNDKVVDNMLADGNMLDMAGTQVEIKKAEPKKSSNSGSLPPFASDSRTLSYNDGFGGFGDSYGSFASSGYGPASYRSLGGFGGRLGSYGGYGGGDDFGGSFGGYGGVGGGAGGGYAGYRAESSFGYSSRYGSYMGGLGGGYGSGGLGVYGRGSGAYGSYGGPGTGTGYESGPGAGYGGVGGGLYGSRGGYGGSSRYHPYAR* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1275 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Aev02g1275 355 Gene3D - 96 193 IPR012677 -
Aev02g1275 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Aev02g1275 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Aev02g1275 355 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 355 - -
Aev02g1275 355 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Aev02g1275 355 SMART rrm1_1 19 90 IPR000504 GO:0003723
Aev02g1275 355 SMART rrm1_1 107 180 IPR000504 GO:0003723
Aev02g1275 355 SUPERFAMILY RNA-binding domain, RBD 100 201 IPR035979 GO:0003676
Aev02g1275 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Aev02g1275 355 Gene3D - 18 95 IPR012677 -
Aev02g1275 355 PANTHER OS08G0320100 PROTEIN 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1275 Aev-Chr2 13463990 13466486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1275 4 169 Eukaryotic Initiation Factors Gene Family AT1G71770 26.630 8.36e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1275 K12741 - gmx:100801373 387.497