Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0919 ATGTTCCCGCCCGTCGTGCATAAGGCTTGGGGATTTCTGTTTCGGGGAACCGTTTACCGCTCTTCCAGGGTCGTCACTAATGCCTTTTCCGGTCATCCCATTCATCGTAGACAATGTTTCCACCAAGACCTACAACAAGGATTGAGTGCACCCTTCGTCATTTCCACAACACATGACATTAATGAGCTGCCCATTTTTGCCATTGACCAACTTTGGGGCCTCAAAATCCAATGCCCCCATGGTGATGATGCAAACTTTGCTATAGCGAGGCTGGAACAGTCCCCCGAGATCGTGGAGTATGAGATGATGTCTCACTTGAAGGCAAGAAGGATTAACCTGCTAATTTATTCTAAGCTTTTGAACATAAACCATCAAGAGGAGCGCCTTTGGATGTTCATGCCAGTGAAGGAAATTGTTGGAATGGTTTTGCAGATTGATAATCTCACGGGACAAACCCCCTTTCCCAGAGCCAATATCCCCATTAACGTCCACTATACCAATGATTTTGGACCAAAAATAGGCATGTGGAACTACGCCAATATTCACTCTGGTCAGGTAGTACACTCCTTAACCAATATATGCGCTCAATACCACCCGGAACTCATGCTCGTCACAAACGCTGCCAATCTTGGAATTGCAAAGCAGATGGGTAATCATGGCCTCCCACATCCATACAACCATTCGTCAATGTTCAACACTGATCCGGGTAGCGGGGTATATGCGATGTGGAACATAAATGTCATTAGGTGTCTTTGTGTATCTTGTCAGCCTGCTTCAATTAGCCAAGTTGGTGACTTTGAGATGAATGTCCAGAAGCTCAAGATGATAATGGAGTCGTGGTGGAGGAGGTGGAGCCAAGAGGATGAAGAGAATATGCACAAGGTGATAATGTGCTATGTGGAGTGTTTGGGTGGTTGGAGGTGCTCTTATGGGGCTAATTGTATCAGGTGTGGCTATAAGGTGGAGCATTTGCTTGATTGCATGCGAATTAGGGGTGAGTGTCATGCAAAGACGGTTTCCGGCGAGGTGCCGGAAGACCCGGTGGTTTCGAAGAAATCCGGTCTTCTTTTCGAGAGGCGCTTAATTGAGACGCACATAGCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTTTGGATGACCTTGTACCGATCAAAACAGGCAAGATAGTGAAGCCCAGACCTGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGGATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCGTTGGAGCAACAATTGCATACAGCAAGGCAAGAACTAAGTCATGCTTTATATCAGCATGATGCTGCTTGCCGAGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCATTGCTGGCACAGGCAGAAAGGCAATTCCCTGTTTCAGCAAATTCCATGCCAGCAAATGTATCTGGCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAAGAGCTGGCACAAGGTGGAAAGAGAATGCATCCTGGCATAACTTCTACCATTATTTCTGAGCTTACTGACTGTAATGCTGCTCTCTCACAACAGAGGAAAAAGCGACAGATTCCTGCAACTCTGGCTCCTACTGATGCTATAGAGGCATATACCCAGATATCTAGCCACCCCTTTCACAAAACAAACAAACCAGGCATTACATCTCTTGATATCCTTTATTCTAAGGACCTAATTGCAACTGGCGGTGTTGACTCAAATGCAGTTATTTTTGACCGGCCATCAGGACAGATATTATCTACACTCAGTGGCCATTCTAAAAAGGTAACCAGCATAAAGTTTGTAGCTCAGGGTGAATCGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAAGCTCAGATGATGGTAGCTATAACTGCAAGCACATCTTGAGGGATCATACGGCTGAGGTACAAGCTGTCACTGTTCATGCCACCAATAATTACTTTGTGACTGCTTCACTTGATGGAACTTGGTGCTTTTATGAACTGTCTTCAGGAACATGTCTGACTCAGGTTTCAGACTCTTCAGGTTCTTCTGAAGGCTATACTTCTGCAGCTTTTCACCCTGATGGGCTTATTCTCGGAACCGGCACCACAGAAGCTCTTGTCAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCAAGGTTTGATGGACATGTAGGGCCAGTGACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGACTGCAGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAAAACTTCAGGAATTTCTCTCCATACGACCCAGAAACTTCAACAAACTCAGTGGAGTTCGACCATAGTGGATCCTACCTCGCAGTTGCAGGCTCTGATATCAGGATTTACCAAGTTGCGAACGTCAAATCTGAATGGAACTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGTAAAGCCACCTGTGTTAAATTCGGTCCAGATGCGAAATACATAGCTGTGGGATCAATGGACCGGAATCTTCGAGGTTTAAGCCTCTTTTCAATGGCCACGCCCTTTGCCTTTCCTCTCACTGCGGCTCAGGTTGGGACGTACTTCGTGGGGCAGTACTATCAAGTGCTTCAGAATCAGCCGGAGTTCGTGCACCAGTTCTACTCTGATGCCAGCACCATGCTCCGAATCGACGGTAATGCCAGGGAGACTGCCACCGCAATGCTGCAAATCCATGCACTGGTGATGTCATTCCGTTATACTGGAATTGAAATCAAGACGGCACAATCTCTGGAATCCTGGAGTGGTGGTGTTCTTGTGATGGTTTCTGGATCCGTGCAAATTAAGGAATATAATCGGAGGAGGAAATTTACGCAGACATTCTTCCTTGCACCCCAAGAAAAAGGCTTTTTCGTGCTCAATGATATTTTTCACTTTGTTGAAGAAGATCCGATTCACCATCACCAGGCAGTCTTGTTAGCTCAGAGCAATCTTGATTCAAAACTGAATGTTCCAAGCACAATTAATAAGCCAGTGTCCAACTACCTGCTGGGTGGAGATATCCAGGCCAGGGAGTTTGCTCCTACAAATGAAGTAAAAGAAAATGGGGTAGTTGACAGTTTCGGATATTCGGAGCAAAGAATGCAGCAAGGCCCTGATTCAGAGCATGTTCGGGAGGATAATGCCGTGGAAGAGTCAAATGCTTCCGTTCAATCTTCAGTCAATGCTGTGCAAGACCATGCTCCTGCTTCTCCTGAAGAACCTTCTGGAGAGCCACAAAAGCACACTTATGCCTCTATTTTACGGGTTGCCAAAGGGCAATCTACACTGTCTGTAGCTCCTCAGCCATCTCATAAGAATGTGTCGTCTTCAGACTGGGAGCAGGCTCCACAGAGTACTGGCCAGCCAACAAATGCTCCATTAAATGCAGTTGAAGGGCCTGAAACTGATGAAGCAGAGGAGGTTCCTGCAACAGAAGATGAAGATGAAGTCAAATCTGTTTATGTGAGGAATTTGTTACCTTCCGTGTCTCCTTCTGAAATTGAAGAAGAATTCAAGAATTTTGGTAGAATCAGGCCTGATGGTGTTGTTATAAGAAGTCGCAAGGATGTTGGTGTTTGTTATGCATTTGTTGAATTTGAAGATATGGCAGGTGTTCATAATGCAGTCAAGGCCGGATCTGTTCAGATAGCAGGAAGACCAGTATACATTGAAGAGCGGAGACCAAACAGTAACATCCCTTCTCGAGTAGGAAGACGGGGTAGAGGCAGGGGTGGCTATCAATCAGAGGCACCAAGAGGGCGTTTCAACTCAAGGAACTATGGCAGGGGAAACGGCCAAGATGGCGGTGATCGCGAGTACTACAACAAACCCAGATCAAATGGTTTCTATCGACCCAGTCCTCGCCAAGAGAGGGGATATTCAGGGAATCAAGCACTAAGAAATGGGCAGAATCAACCCTAG 3963 0.4585 MFPPVVHKAWGFLFRGTVYRSSRVVTNAFSGHPIHRRQCFHQDLQQGLSAPFVISTTHDINELPIFAIDQLWGLKIQCPHGDDANFAIARLEQSPEIVEYEMMSHLKARRINLLIYSKLLNINHQEERLWMFMPVKEIVGMVLQIDNLTGQTPFPRANIPINVHYTNDFGPKIGMWNYANIHSGQVVHSLTNICAQYHPELMLVTNAANLGIAKQMGNHGLPHPYNHSSMFNTDPGSGVYAMWNINVIRCLCVSCQPASISQVGDFEMNVQKLKMIMESWWRRWSQEDEENMHKVIMCYVECLGGWRCSYGANCIRCGYKVEHLLDCMRIRGECHAKTVSGEVPEDPVVSKKSGLLFERRLIETHIADYGKCPITGEPLTLDDLVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSANSMPANVSGLSNGKRAAEDEELAQGGKRMHPGITSTIISELTDCNAALSQQRKKRQIPATLAPTDAIEAYTQISSHPFHKTNKPGITSLDILYSKDLIATGGVDSNAVIFDRPSGQILSTLSGHSKKVTSIKFVAQGESFLTGSADKTVRLWQSSDDGSYNCKHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSGSSEGYTSAAFHPDGLILGTGTTEALVKIWDVKSQANVARFDGHVGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFSPYDPETSTNSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRGLSLFSMATPFAFPLTAAQVGTYFVGQYYQVLQNQPEFVHQFYSDASTMLRIDGNARETATAMLQIHALVMSFRYTGIEIKTAQSLESWSGGVLVMVSGSVQIKEYNRRRKFTQTFFLAPQEKGFFVLNDIFHFVEEDPIHHHQAVLLAQSNLDSKLNVPSTINKPVSNYLLGGDIQAREFAPTNEVKENGVVDSFGYSEQRMQQGPDSEHVREDNAVEESNASVQSSVNAVQDHAPASPEEPSGEPQKHTYASILRVAKGQSTLSVAPQPSHKNVSSSDWEQAPQSTGQPTNAPLNAVEGPETDEAEEVPATEDEDEVKSVYVRNLLPSVSPSEIEEEFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMAGVHNAVKAGSVQIAGRPVYIEERRPNSNIPSRVGRRGRGRGGYQSEAPRGRFNSRNYGRGNGQDGGDREYYNKPRSNGFYRPSPRQERGYSGNQALRNGQNQP* 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats profile. 727 767 IPR001680 GO:0005515
Aev02g0919 1320 CDD NTF2 861 981 IPR018222 -
Aev02g0919 1320 Gene3D - 534 849 IPR015943 GO:0005515
Aev02g0919 1320 CDD RRM_SF 1167 1238 - -
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 627 - -
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 685 720 - -
Aev02g0919 1320 SUPERFAMILY WD40 repeat-like 555 845 IPR036322 GO:0005515
Aev02g0919 1320 SMART rrm1_1 1166 1238 IPR000504 GO:0003723
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1046 1094 - -
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1064 1079 - -
Aev02g0919 1320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1165 1242 IPR000504 GO:0003723
Aev02g0919 1320 SUPERFAMILY RING/U-box 339 387 - -
Aev02g0919 1320 Coils Coil 449 469 - -
Aev02g0919 1320 Pfam Nuclear transport factor 2 (NTF2) domain 865 979 IPR002075 -
Aev02g0919 1320 Gene3D - 1144 1296 IPR012677 -
Aev02g0919 1320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1167 1225 IPR000504 GO:0003723
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 627 IPR001680 GO:0005515
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1241 1320 - -
Aev02g0919 1320 PANTHER PRE-MRNA-PROCESSING FACTOR 19 338 849 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Aev02g0919 1320 CDD WD40 559 845 - -
Aev02g0919 1320 SMART Ubox_2 340 400 IPR003613 GO:0004842|GO:0016567
Aev02g0919 1320 SUPERFAMILY NTF2-like 861 980 IPR032710 -
Aev02g0919 1320 ProSiteProfiles Nuclear transport factor 2 domain profile. 865 979 IPR018222 -
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 726 IPR001680 GO:0005515
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1304 1320 - -
Aev02g0919 1320 ProSiteProfiles U-box domain profile. 330 404 IPR003613 GO:0004842|GO:0016567
Aev02g0919 1320 Gene3D - 857 984 - -
Aev02g0919 1320 SMART WD40_4 761 800 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 675 717 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 633 672 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 543 585 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 807 848 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 588 627 IPR001680 GO:0005515
Aev02g0919 1320 SMART WD40_4 720 758 IPR001680 GO:0005515
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1109 1142 - -
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 681 IPR001680 GO:0005515
Aev02g0919 1320 Pfam WD domain, G-beta repeat 589 626 IPR001680 GO:0005515
Aev02g0919 1320 Pfam WD domain, G-beta repeat 808 845 IPR001680 GO:0005515
Aev02g0919 1320 Pfam WD domain, G-beta repeat 723 758 IPR001680 GO:0005515
Aev02g0919 1320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 394 IPR013083 -
Aev02g0919 1320 CDD RING-Ubox_PRP19 339 388 - -
Aev02g0919 1320 SUPERFAMILY RNA-binding domain, RBD 1158 1271 IPR035979 GO:0003676
Aev02g0919 1320 Pfam Prp19/Pso4-like 400 465 IPR013915 -
Aev02g0919 1320 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 727 760 - -
Aev02g0919 1320 MobiDBLite consensus disorder prediction 1109 1163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0919 Aev-Chr2 8210194 8239876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0919 339 849 U-box Gene Family AT1G04510 72.994 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0919 K10599 - gmx:100527039 932.939