Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0880 ATGTCGGAACATTCCATAATACCAGAAGAAAAGGAACCAGGAACCTTCCAGAAGGTTCCATCGTCCCCATCGAAAAACGACGTCGTTTTATTCGATGGAAAGCCCGTCTTCGTCGTCCAGCCCCTCACCGTTGTTCGTGCTCTCACTAGCACCCGAGTCATCGCCCCGCATAACCCGGACGAGTCCCAAACTCACCCGAGTCAATCCGGAAAACTCGTTTCGCCCAGGAAAGAAGAAGAAACGCGTTTCGATGAAAACGACGGAGACTCTCCCACTGAGGTGGTTATGGAGACGCCGATGGAGGAAGAACAACAAGAGCCCGAAAACGACGACAAAATCGCTTCCTCCTCCGAAGCGCGACGCTCTACGATGTCGTTTGAGGAGTTTCTGAAAGCCACGGGAACCAAAGTTGCGTCCAAAGAGGAGTCTCTGAATCCAATCGCTGACGCTCGGAGTAGTTGTGAAGGCGAGAATGAGAAACCGCTCGCCGATGATGACGTGGAGGTTCTGAGCGTGAAGAAGCCGGTGAAGGTTGAAGAGAAGATTCCTGGTGTTGAAGACGGTGATTTCGAAGTGCCACCTGGGTGGTTGTTGATGGGAAGGAAGGTAGAGATTGTGGTTGCCACAGCAAAAGGAGTGAGGAGGCTTGTGGATAATGAGATTGTTCACTTCGATTTCCCAATACCCACTTCCTATCGCAACAAGTCACAATCGATCGTTCGAGTCTCAACCAAGCGTTCTGGAGGGGTTGGGAGGCTTCCAATGGAATGGGCAAAGACTGTTGTTCCACTTGTGCAATCTGGAAATGTAAAGGTTTTTGGTCGATGCATTGCTGCCCCTTACAGCCTGCAAATGATGCAAGAAATCATGATTTTAGTGAGCTTTTACTTTCACAAATCTGTATTCATAGAATGCATTGACAGCTCTTGGAGGCTTGAACCTAGCAGAAACAATAATTCTTCCATTTATCCACTCCTTCAACTGTTCAGAATGCTAGAGATTAAACCATCCCAGAAGGCTGAATTCTCCCCTGAGGAAATAGATCCTCAGAAGCGACTGCTAAATCCTAGTGTTGACCCAGATGAAGTTGCAGCGTTACCTATGATCAAGCGAAGAAAGGGTATTGAAACAAAGAAAGGTGGAGAACAGATTCCAGAGCAGGATGAAAATGAACAAGCTCTTTCAGAATCAACTTTGAACAAACTTGTTGGAGCTGCAGAAATCTATGACCTGGAGGAGATGGATGCTCCGGAGATGCTGACGTGTGTTCTGAAGCCTTACCAAAAACAAGCTCTCTATTGGATGACAGAAATAGAAAAGGGAAACAATGTTGAGAGTGAGCAAATTCTCCATCCTTGTTGGTCAGCCTACAATATCTGCGACGGAAGGAGAATTTATGTTAATATCTTCACGGGAGAAGCAACAACTAAGTTTCCAAGAGCAACACAAATGGCTAGAGGAGGAATTCTAGCAGATGCAATGGGACTTGGAAAGACAGTTATGACAATTTCTCTGATTCTCAGTAACCCTGGCAGAGGGAACTCAGAAAATAATATTATCACGAATAGGAGCAGGAATCACTCATATAAGGGTGGCACTCTTATTGTTTGTCCAATGGCATTGTTAAGTCAGTGGAAGGATGAGCTTGTAACACATTCAAAAGAAGATAGTTTGTCAATATTTGTTCACTACGGTGGGGGTAGAACCACTGACCCAGAGTTGCTTGCAGCACATGATGTTGTCTTAACAACATATAATGTCCTATCTGTTGCATTTAAAAATGATGGAGGGGATAGCATCTATCACAGGGTCCAATGGTACAGGATTGTGCTAGATGAAGCTCATACTATTAAAGCCCACAAAAGCCAGGGTGCCCAGGCTGCTTTTGCATTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCTCTTCAGAATAGTTTGGAGGACCTTTTCAGCCTCATACGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGAATGGTGGAATAAGTTGATTCAAAGGCCTTATGAGAATAATGATCCGAGAGCCTTGAAACTGGTGAAAGCCATTTTAAGGACACTGATGTTAAGAAGGACTAAGGGAACAAAGGACAAAAACGGAAGGCCCATACTTCTCCTGCCAGCAATTGATACTCAATTGATTGAGTGTGAACAGTTGGAATCTGAACGTGATTTCTATGATGCCCTTTTCACCAGATCTAAGGTTCAATTTGACCAGTATGTTGCACAAGGAAAGGTTCTTCAACACTATGCGAATGTCCTTGAACTACTGTTGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGTGGGAATGATCCGCATAAATATGCAGACTTGAGCAGACTTGCGAGAAAGTTCCTCCAGTCTAGTGCTGAATCAGCCAAATTATGCAGCCAAAATGATCCACAGAAGCAAGCAGAGTTGAACAAACTCGCAACTCAATTCCTTCTGAATACTGATTCCGCTACCAGCTCTCTGCAATCCCGTGCATACATTGAGGAGGTTTTGGATCACATTCAAAAGGGTGAAACTATAGAATGCCCTATATGTATGGAGTCACCAGATGAGCCTGTGTTTACACCATGTGCACATAGGTTTTGTAGAGAATGCCTATTCAGTCACTGGGGGACCTCAGAGGGTGGTAATTGTGCAATCTGTCGTCAACAACTCAAGAAAAGTGATCTGATAACTTGTCCATCTGAAAGCCCTTTCAAGGTTGATATTGCCAACAATATGACAGAGTCTTCAAAGGTTTCAAAGCTTTTGGATTTCTTGCAGGACATTCAGAAATCACCCTCTGGTGAAAAAAGTATTGTATTTAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCACTGAGAAGGAGAGGAATTGGTTTTTTAAGATATGATGGCAGATTGACCCAAAAACAGAGGGAGAAAGTTTTGAATGAATTTAACGAGACAACACAGAAAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGCGTAGGATTGAACTTAACTGCTGCCTCAAATGTTTTCATGATGGATCCGTGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATTGGACAAAAGCGAAAGGTTATTGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGATCGCTTACAACAAGTGCAGGCAAGGAAACAGAGAATGATATCTGGTGCACTTACTGATGACGAGCCCCCGGAGCTCACCGGAAAGTTGCCGGAAAGTTCGCTAGAGAAGACAACTTTTGCCGGAGAAGACGACATTTGCCGGAAAGTCCGCCGGAGAAGACGACCCCTTCCGGAATATTCCCCGGAATATTCTCCCATAATTCAGAGGTTGAAGACGACCACGTCATCCGCCACATCAGCCATTCTGTCCAAATCAGCGACACATCATCCATCAGTTGCGTGCCAAATGTCACTAGTGCCACCTCATCTCAACATACTTCAGTAA 3504 0.4472 MSEHSIIPEEKEPGTFQKVPSSPSKNDVVLFDGKPVFVVQPLTVVRALTSTRVIAPHNPDESQTHPSQSGKLVSPRKEEETRFDENDGDSPTEVVMETPMEEEQQEPENDDKIASSSEARRSTMSFEEFLKATGTKVASKEESLNPIADARSSCEGENEKPLADDDVEVLSVKKPVKVEEKIPGVEDGDFEVPPGWLLMGRKVEIVVATAKGVRRLVDNEIVHFDFPIPTSYRNKSQSIVRVSTKRSGGVGRLPMEWAKTVVPLVQSGNVKVFGRCIAAPYSLQMMQEIMILVSFYFHKSVFIECIDSSWRLEPSRNNNSSIYPLLQLFRMLEIKPSQKAEFSPEEIDPQKRLLNPSVDPDEVAALPMIKRRKGIETKKGGEQIPEQDENEQALSESTLNKLVGAAEIYDLEEMDAPEMLTCVLKPYQKQALYWMTEIEKGNNVESEQILHPCWSAYNICDGRRIYVNIFTGEATTKFPRATQMARGGILADAMGLGKTVMTISLILSNPGRGNSENNIITNRSRNHSYKGGTLIVCPMALLSQWKDELVTHSKEDSLSIFVHYGGGRTTDPELLAAHDVVLTTYNVLSVAFKNDGGDSIYHRVQWYRIVLDEAHTIKAHKSQGAQAAFALSSHCRWCLTGTPLQNSLEDLFSLIRFLRVEPWCNWEWWNKLIQRPYENNDPRALKLVKAILRTLMLRRTKGTKDKNGRPILLLPAIDTQLIECEQLESERDFYDALFTRSKVQFDQYVAQGKVLQHYANVLELLLQLRRCCNHPFLVMCGNDPHKYADLSRLARKFLQSSAESAKLCSQNDPQKQAELNKLATQFLLNTDSATSSLQSRAYIEEVLDHIQKGETIECPICMESPDEPVFTPCAHRFCRECLFSHWGTSEGGNCAICRQQLKKSDLITCPSESPFKVDIANNMTESSKVSKLLDFLQDIQKSPSGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGRLTQKQREKVLNEFNETTQKRVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRKVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEPPELTGKLPESSLEKTTFAGEDDICRKVRRRRRPLPEYSPEYSPIIQRLKTTTSSATSAILSKSATHHPSVACQMSLVPPHLNILQ* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0880 1167 PANTHER DNA REPAIR PROTEIN RAD5B 373 1080 - -
Aev02g0880 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 699 IPR027417 -
Aev02g0880 1167 SMART helicmild6 959 1042 IPR001650 -
Aev02g0880 1167 CDD SF2_C_SNF 914 1053 - -
Aev02g0880 1167 MobiDBLite consensus disorder prediction 55 71 - -
Aev02g0880 1167 Pfam SNF2-related domain 427 777 IPR000330 GO:0005524|GO:0140658
Aev02g0880 1167 ProSitePatterns Zinc finger RING-type signature. 873 882 IPR017907 -
Aev02g0880 1167 MobiDBLite consensus disorder prediction 54 121 - -
Aev02g0880 1167 SMART ultradead3 420 669 IPR014001 -
Aev02g0880 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 1081 IPR027417 -
Aev02g0880 1167 MobiDBLite consensus disorder prediction 72 89 - -
Aev02g0880 1167 MobiDBLite consensus disorder prediction 1 27 - -
Aev02g0880 1167 MobiDBLite consensus disorder prediction 376 395 - -
Aev02g0880 1167 Pfam Helicase conserved C-terminal domain 928 1042 IPR001650 -
Aev02g0880 1167 Pfam HIRAN domain 207 291 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aev02g0880 1167 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 373 1080 - -
Aev02g0880 1167 CDD DEXDc_SHPRH-like 424 699 - -
Aev02g0880 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 931 1090 IPR001650 -
Aev02g0880 1167 SUPERFAMILY RING/U-box 846 906 - -
Aev02g0880 1167 ProSiteProfiles Zinc finger RING-type profile. 858 898 IPR001841 -
Aev02g0880 1167 Gene3D - 474 700 IPR038718 -
Aev02g0880 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 479 661 IPR014001 -
Aev02g0880 1167 Pfam Zinc finger, C3HC4 type (RING finger) 858 897 IPR018957 GO:0046872
Aev02g0880 1167 Gene3D - 715 1113 IPR027417 -
Aev02g0880 1167 SMART ring_2 858 897 IPR001841 -
Aev02g0880 1167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 849 906 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0880 Aev-Chr2 7707281 7716064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0880 165 1081 RAD5 or RAD16-like Gene Family AT5G43530 61.915 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev02g0880 SNF2_N 1.7e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0880 K15505 - gmx:100806677 1411.74