Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0565 ATGTCGTTTAGGAGCATCATCCTTGATAGGAAGGGTTTGAGATCCAGGTCACAATCCCACCGTGATGGTGATGGTGTTGTTGGTGTTATTGGTGAGGGTGGCTTGGTTGTGATTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCATGAGCTATTGATGGATGTGCTCATGAGGATTGAGGCCTCTGAAGATGCATGGCCTTCCCGGAAACATGTCGTGGCCTGCGCCGGAGTCTGCCGTAGCTGGAGGGAGATCATGAAGGAGATTGTCAAGTCCCCTCAAGATTCCAGCAAGCTGACATTCCCAATCTCCTTGAAGCAGCCCGGTCCAAGGGACTCTCTTCTTCAGTGCTATATCAAACGGGATCGCAGTAATCAAATATATTATCTGTTCCTTGGTGTAAATCAAGCCTCAACTGACGATGGCAAGTTCCTTCTCGCTGCACGCAAGTGTCGGCGTGCAACCCATACTGACTATATCATCTCTTTGAACCATCATGATGTATCAAGAGGGAGTAGCACCTATATCGGGAAGTTGAGATCAAACTTTCTGGGTACCAAATTCACGGTATATGATGCACACCCACCAATTTGTGGAGCGAAAGTTACAAAGTCTCGCTCCACCAGGCTAGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCTGGAAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTTTGGGCTCCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCATCTGTTGAACCAGGAGGTGTTGCTCCAACGCAGACTCAATTTCTCCATAGCAGAATTGATGCGTCTCCATCTATCCCTTTCTTTAGATCAAAATCAACCCGCATGGAGAATCTCCAATCAGTACCTCCGACTTGTCAAAATGAGGGGATGCTGGTACTACGGAACAAGTCGCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTCTGAACTTCAACGGACGAGTTACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCGAAAAACGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATCCTACAGTTTGGAAAAGTCGGGAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1197 0.4703 MSFRSIILDRKGLRSRSQSHRDGDGVVGVIGEGGLVVIDGLKQSCWANMPHELLMDVLMRIEASEDAWPSRKHVVACAGVCRSWREIMKEIVKSPQDSSKLTFPISLKQPGPRDSLLQCYIKRDRSNQIYYLFLGVNQASTDDGKFLLAARKCRRATHTDYIISLNHHDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASSVEPGGVAPTQTQFLHSRIDASPSIPFFRSKSTRMENLQSVPPTCQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0565 398 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 397 - -
Aev02g0565 398 Pfam F-box domain 46 92 IPR001810 GO:0005515
Aev02g0565 398 Gene3D Tubby Protein; Chain A 103 398 IPR025659 -
Aev02g0565 398 Pfam Tub family 107 393 IPR000007 -
Aev02g0565 398 ProSitePatterns Tub family signature 2. 383 398 IPR018066 -
Aev02g0565 398 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 355 374 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 376 398 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 310 327 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 328 344 IPR000007 -
Aev02g0565 398 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Aev02g0565 398 PANTHER TUBBY-RELATED 1 397 - -
Aev02g0565 398 SUPERFAMILY F-box domain 41 89 IPR036047 GO:0005515
Aev02g0565 398 SUPERFAMILY Tubby C-terminal domain-like 97 398 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0565 Aev-Chr2 4381747 4384208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0565 1 398 TUB Transcription Factor Family AT2G47900 71.990 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev02g0565 Tub 1.6e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0565 K19600 - gmx:100809257 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g0565 02 4381747 4384208 Aev02g0565 02 4381747 4384208 ECH