Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0549 ATGGGAGATAACAATAGAGAACAACTAGTACTACCCTTTAAGTACACTTCTACTACCTTCACATCTTCTTCAACCTCTAATTCCTCACATGACCATCATGATCATGTTTTGAAGGAGCAAGATCGGTTGCTTCCAATAGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCCCCAAATGCCAAGATCTCAAAGGAAGCCAAAGAGACTATGCAAGAGTGTGTTTCCGAGTTCATAAGCTTTGTGACCGGTGAAGCCTCTGACAAGTGTCACAAGGAGAAGAGGAAGACAGTTAATGGTGATGATGTTTGTTGGGCCTTGGCTACCTTAGGGTTTGATGATTATGCTGAGCCACTTAAGAGGTACTTGTATAAGTTTAGGGAATTGGAACTTGAGAAAGCTAATAATAATCAAAATAAGGCTAATAATAATAATAATATTGATGAAACATATAATAATTATGGAGTTGATGAGCCATTACCAACAACAAGGAGAGCAATTAACCACTTTTAG 513 0.3821 MGDNNREQLVLPFKYTSTTFTSSSTSNSSHDHHDHVLKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWALATLGFDDYAEPLKRYLYKFRELELEKANNNQNKANNNNNIDETYNNYGVDEPLPTTRRAINHF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0549 170 SUPERFAMILY Histone-fold 40 151 IPR009072 GO:0046982
Aev02g0549 170 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Aev02g0549 170 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Aev02g0549 170 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Aev02g0549 170 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aev02g0549 170 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 21 149 - -
Aev02g0549 170 MobiDBLite consensus disorder prediction 136 152 - -
Aev02g0549 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Aev02g0549 170 Coils Coil 124 144 - -
Aev02g0549 170 MobiDBLite consensus disorder prediction 136 155 - -
Aev02g0549 170 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aev02g0549 170 Gene3D Histone, subunit A 32 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0549 Aev-Chr2 4220109 4220621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0549 14 137 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.883 2.44e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aev02g0549 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0549 K08065 - fve:101303182 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g0549 02 4220109 4220621 Aev02g0549 02 4220109 4220621 ECH