Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0319 ATGTCATTCACAGGAACTCTTGATAAATGCAATGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGCATTCCTTACCATAAAAATTGCTTCAAATGCAGCCATTGCAAGGGAACTCTCACGATGAGCACATACTCATCAATGGATGGAGTCCTGTATTGCAGGACACATTTTGAGCAGCTTTTCAAGGAATCTGGAAACTTCAGCAAGAATTTTCAAAACGCAAAGTCTTCTGAGAAACAAAATGATCTGAATAGGACCCCGAGTAGGCTCTCTTCAATGTTCAGTGGAACCTTAGACAAATGCTCTGTTTGCTCAAAAACAGTGTATCCACTGGAAAAGGTGACACTTGAAGGAGAATGCTTCCACAAGAGTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCCTCCTATGCTGCCCTAGATGGTGTCCTCTATTGTAGGCACCACTTTGCACAACTCTTCATGGAGAAGGGTAACTACAGCCATGTCCTCCAAGCTGCTGCTCACAAGAGGAGTGGTTCTTCCCCACCCCCGGAGGCCGCTGATGGGCTCGAGCCGGCGGCAGAGGAGTCCAAGGAGAAGAATGAAGAGGACACCACCTCTTGA 630 0.4635 MSFTGTLDKCNACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRTHFEQLFKESGNFSKNFQNAKSSEKQNDLNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRSGSSPPPEAADGLEPAAEESKEKNEEDTTS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0319 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aev02g0319 209 MobiDBLite consensus disorder prediction 193 209 - -
Aev02g0319 209 Gene3D Cysteine Rich Protein 5 72 - -
Aev02g0319 209 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Aev02g0319 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Aev02g0319 209 SMART lim_4 9 61 IPR001781 -
Aev02g0319 209 SMART lim_4 105 157 IPR001781 -
Aev02g0319 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Aev02g0319 209 Gene3D Cysteine Rich Protein 102 170 - -
Aev02g0319 209 Pfam LIM domain 10 65 IPR001781 -
Aev02g0319 209 Pfam LIM domain 106 161 IPR001781 -
Aev02g0319 209 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Aev02g0319 209 MobiDBLite consensus disorder prediction 175 209 - -
Aev02g0319 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Aev02g0319 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aev02g0319 209 CDD LIM1_SF3 6 68 - -
Aev02g0319 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aev02g0319 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0319 Aev-Chr2 2365324 2367607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev02g0319 LIM 1.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0319 - K09377 gmx:100800234 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g0319 02 2365324 2367607 Aev02g0319 02 2365324 2367607 ECH
Aev06g3224 06 33673034 33675713 Aev02g0319 02 2365324 2367607 PCT