Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0250 ATGTCCCAATCAGAGAGCAAGAAGAAGAAGAAGAATCTCCACAAACACAAACACGATCATCATGATGATCAAGAACGAGATCAAGAACAAGAACAAGGAGTAGTAGGAGATTTTCTGATCAAGCCACAGAGCTTCACTCCCTCAATCGACACTTCTCAATGGCCGATTCTGCTTAAGAACTACGATCGCCTCAATGTTCGCACCGGCCACTACACTCCACTCCCTTCTGGGTACTCTCCCCTGAAGCGTCCCCTTCAGGAGTACCTCAAATATGGCGTCCTCAACCTCGATAAACCCTCTAACCCTTCTTCTCATGAGGTCGTCGCATGGATCAAGCGCATCCTCCGCGTCGAGAAAACCGGACATTCCGGCACCCTCGACCCTAAAGTCACCGGAAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTTGTTAAGTCCCAACAGGGTGCCGGCAAGGAGTACGTCTGTGTTGCCCGCCTCCACTCCGCCGTACCTGACCCTGCCCGTGTTGCCCGTGCCCTTGAGTCACTCACCGGCGCCGTTTTCCAGCGTCCTCCTCTCATCTCCGCCGTCAAGCGCCAGCTCCGTATCCGTACAATCTATGAAAGTAAGCTTCTTGAGTATGACCCAGATAGGCATTTGGTTGTTTTCTGGATTTCTTGTGAGGCTGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGGTTGATCCTTGGTGTGGGTGGGCATATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATCATGGGTGAGAAGGATAACATGGTTACTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGACTTACTTGAGGAGGGTTGTTATGCCCCTTGAGGTTCTTTTGACTAGCTATAAGAGGCTTGTTGTTAAGGATTCTGCTGTTAATGCTATCTGCTATGGTGCGAAGTTGATGATTCCTGGTTTGCTTAGGTTTGAGAATGATGTTGAGGTTGGGGAGGAGGTTGTGCTCATGACTACTAAGGGGGAAGCCATTGCTCTTGGCATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTGGCTAAGATCAAGAGGGTCGTTATGGATAGGGATACTTATCCGAGGAAGTGGGGTTTGGGCCCTAGGGCGTCCATGAAGAAGAAGTTGATAGCTGAGGGGAAGCTGGATAAGCATGGGAAGCCGATTGAGAAGACTCCACAGGAGTGGGTGAGGAATGTTGTTCTGCCTGCTGGTGGGGATAGTGTGATTGCAGGTTTGGCTGCTGCTGCTCCTGAAGCTAAACTTGAGGCTGCTGATGGGGAAGGGAAGAAGAGGAAGAAAGAGGAAAGCAGTGATAGCCCTGCAGCTAAGAAGCTGAAAGTTGTTGAGGTTGTAGAGGTCGAGAAGGAAGAAAAGGTGAAGGTGAAGAAATTAAAGGAAGGGGATGTGGAGGTTGAGGTCGAGAAGAAGGAGAAGAAAAAGAAGAAGAAGAAGGATAAAGAAGAGAAAGGTGAAGTGGCATCATCGGATGAGGAGAAAACTGGAAAAGAGAAGAAAAAGAAGCACAAGGAAGAGGTCGAGAATGGTTCGCCAGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCCAAAGATATTGGTGATGCCGTAATAAGTAATGGAAAGGATGACGGTAATGCAGATAGGAGTGAAAAGAAGCATAAGAAGAAGAAGAGCAAAGATGCTGAAGAAGAATAG 1767 0.4799 MSQSESKKKKKNLHKHKHDHHDDQERDQEQEQGVVGDFLIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLQEYLKYGVLNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDPARVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKPIEKTPQEWVRNVVLPAGGDSVIAGLAAAAPEAKLEAADGEGKKRKKEESSDSPAAKKLKVVEVVEVEKEEKVKVKKLKEGDVEVEVEKKEKKKKKKKDKEEKGEVASSDEEKTGKEKKKKHKEEVENGSPDVDKSEKKKKKKKDKDAKDIGDAVISNGKDDGNADRSEKKHKKKKSKDAEEE* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0250 588 MobiDBLite consensus disorder prediction 483 497 - -
Aev02g0250 588 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 295 IPR032819 -
Aev02g0250 588 SMART DKCLD_2 50 108 IPR012960 -
Aev02g0250 588 Pfam DKCLD (NUC011) domain 51 108 IPR012960 -
Aev02g0250 588 SMART pua_5 299 373 IPR002478 GO:0003723
Aev02g0250 588 MobiDBLite consensus disorder prediction 483 588 - -
Aev02g0250 588 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 3 587 - -
Aev02g0250 588 MobiDBLite consensus disorder prediction 441 461 - -
Aev02g0250 588 TIGRFAM CBF5: putative rRNA pseudouridine synthase 58 383 IPR004802 GO:0006396
Aev02g0250 588 Gene3D PUA domain 51 382 IPR036974 GO:0003723
Aev02g0250 588 SUPERFAMILY PUA domain-like 298 379 IPR015947 -
Aev02g0250 588 Coils Coil 488 508 - -
Aev02g0250 588 TIGRFAM unchar_dom_2: uncharacterized domain 2 293 370 IPR004521 GO:0003723
Aev02g0250 588 SUPERFAMILY Pseudouridine synthase 51 296 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev02g0250 588 ProSiteProfiles PUA domain profile. 298 373 - -
Aev02g0250 588 MobiDBLite consensus disorder prediction 440 461 - -
Aev02g0250 588 Gene3D Pseudouridine synthase 84 290 - -
Aev02g0250 588 MobiDBLite consensus disorder prediction 1 31 - -
Aev02g0250 588 CDD PseudoU_synth_hDyskerin 90 272 - -
Aev02g0250 588 Pfam PUA domain 299 371 IPR002478 GO:0003723
Aev02g0250 588 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 3 587 IPR004802 GO:0006396
Aev02g0250 588 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Aev02g0250 588 MobiDBLite consensus disorder prediction 503 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0250 Aev-Chr2 1814710 1816476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0250 29 453 NAC Transcription Factor Family AT3G57150 86.620 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0250 K11131 - gmx:100806355 792.727