Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0177 ATGGAATCTGGTGAGAGCACTGTATCATCATTGATCATGATGGATGATGATGATGATAGGCATCCCCTTCAGTACTCCTCAATCAACAAGGTGCACAGTAGTAGTGGCCCCACAGCTACAAGTGTTCATGAGCTTCTTGAGTGCCCTGTCTGTACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACACACTCTTTGTTCAACTTGTAAGACAAGGGTACATAACCGGTGCCCGACTTGTAGACAGGAACTTGGTGATATAAGGTGTTTGGCATTGGAGAAGATAGCAGAGTCACTAGAATTGCCTTGCAGATATAACTCTCTTGGATGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGTAACTTCAGACCTTACAATTGTCCCTACGCCGGCTCAGACTGCTCTGTTGTTGGGGATATTCCGTATCTTGTTGCTCATTTAAGGGATGACCATAGGGTAGACATGCATTCCGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTGACAGTCTTCCACTGTTTTGGCCAGTACTTTTGTCTCCATTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTTTACATGGCATTCCTCCGTTTCATGGGCGATGAAAGAGATGCGCGAAGCTATAGCTATAGCCTGGAGGTAGGAGGAAACGGGCGAAAACTAACTTTCGAGGGAAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGATGGCCTCATTGTATACCGGAATATGGCGCTTTTCTTCTCCGGTGGGGACAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAACAAAACCCTGAAGGTGGAGTTTGCATACCAAACCTGTGCAGCTAG 933 0.4534 MESGESTVSSLIMMDDDDDRHPLQYSSINKVHSSSGPTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYNSLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0177 310 CDD RING-HC_SIAHs 46 84 - -
Aev02g0177 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Aev02g0177 310 SUPERFAMILY TRAF domain-like 101 293 - -
Aev02g0177 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 302 - -
Aev02g0177 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 289 IPR008974 GO:0005515
Aev02g0177 310 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Aev02g0177 310 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aev02g0177 310 SUPERFAMILY RING/U-box 33 87 - -
Aev02g0177 310 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Aev02g0177 310 PANTHER UBIQUITIN LIGASE SINAT3 5 302 - -
Aev02g0177 310 CDD Sina 162 290 - -
Aev02g0177 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 100 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0177 Aev-Chr2 1270632 1273254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0177 27 296 C3H Transcription Factor Family AT2G41980 77.778 1.37e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0177 K04506 - gmx:100792687 610.142