Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0135 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACTTTGACGATGAAAACTACATGGAAGAGATGGATGATGATGATGTTGAGGAACAATCAGATGATGATGGAGAGGATGGACGCGGCGACGAAAATGTTGAAGAGCAGGAAGATGAAGACTCTGCGGCGGAGGAGGCTTATGGGAAAGAAGACCAGTTGCCTGAGGCAGATAGAACTGGCACTGTAGAGTCTGAAGAAGACGGGGCGAAACCACCATTTATTGATGAAGAGGAGAAACAGAAGCATGATGAGCTTCTTGCACTTCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCAAAGGATGTGTGTGAGGATGATTTGAGGGAACTGTGCGAGCCCATAGGTGATATTTTTGAGGTGCGAGTAATCAAAGACAAGGACAGTGGAGAAGGGAAGGGATTTGCTTTTGTTGCTTTTAAAGAAAAAGAGGTTGCACAGAAGGCCATCGAAGAGCTTCACAGCAAGACATTTAAGAGTAAAACTTTAAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGAAATGTTCCAAAGAATTGGACTGAGGATGAATTTAGGAGAGTCGTTGAGGGTGTTGGCCCTGGAGTTGAAATCATTGAGCTCTTTAAGGACCCTCAAAATCAAGCCAGGAATCGTGGGTTTGCTTTTGTTTCATATTACAATAATGCTTGTGCTGATTATTCACGGCAAAAAATGTCAAGTGCAAGTTTTAAGCTGGATGGAAATAGCCCAACTGTCACATGGGCAGACCCAAAGAATACCACTGATCATTCCGCAGCTGCACAGGTTAAAGCGCTCTATGTGAAAAACATACCCGAGAATACTACTACTGAACAGCTGAAGGAAGTATTCTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTTTGCAGAGAGGTCAAGTGCATTAAAGGCTATAAAAGATACAGAGAAACATGAAATTGATGGCCAAGTGCTTGAGGTTGTTCTAGCCAAACCTCAAGCAGATAAAAAGTCGGATGCTGGTTATGGCTACAATCCCGTACTTCCACATCCTGGTTATGGTGGTGCCGCCTTTTCTGGAAATCCTTATGGCTCTGTTGGGGCTGGATATGGTGTTGCTCCTAGTTTTCAACAGCCAATGATCTATGGTAGGGGTCCTATGCCAGCAGGAATGCAGATGGTTCCAATGGTGTTGCCGGATGGTAGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGATGCCAGCACCCCGAGCGCCAAGGGTTGATAGGGGCAACAGGCCAGGTGGTCGGCAAGGAAGAGGAGGAGGTGGAGGCGGCAATGATGATGCCAATCGTGGTGGTAGACGGTATCGACCGTATTAG 1437 0.4558 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDDDGEDGRGDENVEEQEDEDSAAEEAYGKEDQLPEADRTGTVESEEDGAKPPFIDEEEKQKHDELLALPPHGSEVFIGGLPKDVCEDDLRELCEPIGDIFEVRVIKDKDSGEGKGFAFVAFKEKEVAQKAIEELHSKTFKSKTLRCSLSETKQRLFIGNVPKNWTEDEFRRVVEGVGPGVEIIELFKDPQNQARNRGFAFVSYYNNACADYSRQKMSSASFKLDGNSPTVTWADPKNTTDHSAAAQVKALYVKNIPENTTTEQLKEVFSRHGEVTKVVMPPSKAGGKRDFGFIHFAERSSALKAIKDTEKHEIDGQVLEVVLAKPQADKKSDAGYGYNPVLPHPGYGGAAFSGNPYGSVGAGYGVAPSFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPAPRAPRVDRGNRPGGRQGRGGGGGGNDDANRGGRRYRPY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0135 478 SUPERFAMILY RNA-binding domain, RBD 276 381 IPR035979 GO:0003676
Aev02g0135 478 SMART rrm1_1 105 178 IPR000504 GO:0003723
Aev02g0135 478 SMART rrm1_1 185 262 IPR000504 GO:0003723
Aev02g0135 478 SMART rrm1_1 280 352 IPR000504 GO:0003723
Aev02g0135 478 MobiDBLite consensus disorder prediction 8 56 - -
Aev02g0135 478 MobiDBLite consensus disorder prediction 1 84 - -
Aev02g0135 478 CDD RRM_SF 106 178 - -
Aev02g0135 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 476 - -
Aev02g0135 478 Gene3D - 6 184 IPR012677 -
Aev02g0135 478 MobiDBLite consensus disorder prediction 57 84 - -
Aev02g0135 478 Gene3D - 185 265 IPR012677 -
Aev02g0135 478 SUPERFAMILY RNA-binding domain, RBD 101 269 IPR035979 GO:0003676
Aev02g0135 478 Gene3D - 266 394 IPR012677 -
Aev02g0135 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Aev02g0135 478 CDD RRM3_hnRNPR_like 278 356 - -
Aev02g0135 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Aev02g0135 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Aev02g0135 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Aev02g0135 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Aev02g0135 478 PANTHER GEO13361P1-RELATED 2 476 - -
Aev02g0135 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Aev02g0135 478 MobiDBLite consensus disorder prediction 435 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0135 Aev-Chr2 903718 909075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0135 106 457 Eukaryotic Initiation Factors Gene Family AT1G71770 25.570 1.03e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0135 K13161 - gmx:100800974 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g0135 02 903718 909075 Aev02g0135 02 903718 909075 ECH