LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev02g0090	ATGGAGTCTGAGGAGTGGAAGAGTGTGAACGCTGCAGAACCATTGTGGCAACCTGCACCTGATATATTGCCCAGTTATGAAAGTGACGAGACTCGTGAGAAGCTTCAGATGATTAGGGTGAAGTATTTGCGATTAGCTCACAGGCTTGGTCAGAACACACCTCACAATGTTGTTGTAGCGCAAGTTTTGCATAGACTAGGACTTTCTGAGTGCCTCAGGGGTAGGAATAGGTTCTATATTGGTGCTTCTAGCTTAAGTCAGCGAGCAAGTGCAATGGCTGAACAACTTGAGGCAGCAGCTGGTCATGATGAGCCACTCGACTTGTCATATACAATACAGGTGCTTGGAAAGACGGGTGTTGGTAAGAGTGCAACACTCAATTCCATATTTGATGATGATGATGATGAGGTTGAGAAGTTGTTTAAAACTGATGCTTTTCATAAGGGAACAACAGAGATTCAGGATGCTGTGGGGACTGTTCGGGGGATTAAGGTACGAGTCATTGATACTCCAGGACTTTTACCATCATGGTCAGGGTTAGGGTCAGGCCGCGAGAGACGACTACATAATGAGAAGGTTCTGCACTCTGTCAAGCGCTTTATTAAGAAAACACCACCTGATGTTTTGTTATATGTGGATAGATTAGATGTTTTGCATAGTAGGGATTTTAGGGATATGCCACTATTATGCACAATTACTGAGATTTTGGGGCCATCAATATGGTTCAATGCCATTGTGGTTATGACTCATGCAGGATCTCCCCTGCCTGAAAGCCCTTTTTGTAGTGTTACTGATCCAAGTTATTATGATTCATATGCTAGACAACGACCTCATTTTGTGCAGCAAGCTATTCGCCATGCATCTGGAGATGGGCGCGTCAAGAATCCTGTATCATTGGTGGAGAACAACCACTCTGCTTGCAGAATAGATAGTGCTGGCCAGAGAGTGCTGCCTAATGGGCAGGCCTGGAAATCACATCTTTTACTCTTATGTTTTGCACCTAAAATTCTGGCTGAGGCGATTGCTCTTCTCAAGATACGAGATGTTTATCCTATAAGAGGTGTAAGGCCTTTCGCTCCAATAAGAGTGCTACGATTACCAATTCTACTGTTATCCCTTCTGCAGTCAAGGCCGCAATTGAAGCTGCCAGAGGAGCAGTTTGGTGATGAGGACGGTCTTGGTGATGATATTGATGAATCAACAAAAGATCTGCCAAGGGACTATGGTCAAAATAATGTGGAAGAAGAAAGTAGTAGTGGTGCTGCAGGTTCTTCTTTTCCTGTTCAGATGCCTGATTTGATGCTGCCTGCATCTGTTGGTTCTGATAATACCACTCACCAGTGGCTTGTAAGACCTGTCCTAGCCACTCATGGATGGGATCATGATGTCGATTATGAAGGGGTAGATGTGGAAGGATTGTTTGTTCTCAAAGACAAGGTACCATTGTCTTTCAGTGGTCAAGTTATTACAAAGGATAAAAAGGATGCCAATAATGTTCTGCAGATGGAAATTTCCAGTTCAGTTAGGCATGGAGAGAAGGGGAAAGCAACATTAGGTTTTGAAATGCAGAGTGTTGGGAAGGACTTAGCTTATACGCTTCGCAGTGAGGCAAGGTTTAGTAATAATTTTAGGAGAAATAAGGCAATGACTGGTATTGCTGGTCTCTCAATCACTCTCCTGGGTGATGCCTTGGTAGCTGGAGTTAAAGTAGAAGACAAGTTTGTTGTTAATGAACGATTCATGTTGGTTGTTGCTGGTGGCTTAATGGCTAGGCACAACGGCGATGTTGCCTATGGTGGTAGTTTGGAGGTGCTAGGACGTTCCCTACCAACACTGAGGGTTTCTGTGATGGATTGGCGTGGAAAGCTTGCAGTTGGATGCAATGTACAATCCCAGATTCCAGTTAGAAACCTTGTTGCCCGAGCCAATATGAACGACCAAGGGGCAGTCAGCATTCGATTGAATGACTCAGAACAACTTCAAATTGCTCTTCTTGTTCTCATCCCTCTATTCAAGAAACTAGCTAATTGGTTATTCTCACCAGTGGCATGCAACTGCAAGCCATGCAAAAACAGGGGCCTGGCTTTCTTGTACACTTCAGAAAAGCAAGTCATCTACCGAGATTTCAAGTCTTCAAATATACTATTTGATGGGCTCCTTCTGGTTTTTTCATTGTTTCTGCAAAATTCAGAATATCTTCAGAGTGATTTTAGCATCTTTGTTGTGTGTTTTGAATTCGCAACCTCTGTTGACACCGGTGTAAGACTAAGCACTCACACATTACCGCGGTTAAGAGACCCTTTCAACAATTGTCTTCTGCGTAACTCAGCTTATCAGTACACTCAACTCGTAGAAGTCGAAAGAGAAAAAGGTATAGAATCCACCATCATCATCATGAGTAGTTCAAGTAACATATTGAATGAGCCACACGGCGTAGAGATAGCAGGGAAGATCATGGTTGCAGCAGTGATTCTCCTATTCATGGTAGTTGCATTTGTCCTATTTCTCCACCTTTATTCAAAGTGCTTCCTGTGGCGTGTTGATGAAGAAACCATCACATTTCAGCCACGTGTAATCCGCCGCCACCCTCGCCGCAGACGCCGCTTTGTCTTTGCCCCAGGCCAAGACCCTATCATCTATGGATCTAATCACCACCAACTTGGTCTTGACCCTTCAGTCCTTAAGTCCTTACCAGTTCTGGTTTTCCATCCAAATGAGTTCAAAGATGGTTTGGAATGTGCTGTTTGTTTATCTGAAGTTGTTCAAGGAGAAAAAGCTAGAATTTTGCCAAGATGCAATCATGGTTTTCATGTGGATTGCATTGATATGTGGTTCCAGTCACATTCTACTTGTCCTCTTTGTAGGACACTAGTTACTACCTATGATCAAAGTACTAGTTCAGGTGCTGAACAGAGTGACTCGGTGAATTTTGAGTCATCACAAACAGAGAATTCAGATGATTTGAGTGTCTTAGAGTTTTCAAATTTCCCTACTCATGTGTTGGTTTGGGGTGACCAGACACAGTTTAGTTCTGTTGGTGTTTCATTGGAGAATGAGAATTCTGAGGTGCCACCTTCAAATTCTTCATCAGCAAGTAATTGTGGCATTGGTGGCACTAGCAGTGATAGCAGATGTAATGAGATGTTGGTGATTGATATACCAAGTGAGTTAAATTCATCACCTTCTTCTAGCAATGATGAAGATGAGATGATGAAACCACCAATGGCAGCAAGATTGAGGTCATTGACAAGGCTTTTGAGTAGGGAGAAGAAGCCAATTAGTCCTTGTAATCCCAATTCTTTTGATGTGGAACTTGCAAATAGCAAGGATTTTGATGATGGTGGTATTCATTGA	3354	0.4305	MESEEWKSVNAAEPLWQPAPDILPSYESDETREKLQMIRVKYLRLAHRLGQNTPHNVVVAQVLHRLGLSECLRGRNRFYIGASSLSQRASAMAEQLEAAAGHDEPLDLSYTIQVLGKTGVGKSATLNSIFDDDDDEVEKLFKTDAFHKGTTEIQDAVGTVRGIKVRVIDTPGLLPSWSGLGSGRERRLHNEKVLHSVKRFIKKTPPDVLLYVDRLDVLHSRDFRDMPLLCTITEILGPSIWFNAIVVMTHAGSPLPESPFCSVTDPSYYDSYARQRPHFVQQAIRHASGDGRVKNPVSLVENNHSACRIDSAGQRVLPNGQAWKSHLLLLCFAPKILAEAIALLKIRDVYPIRGVRPFAPIRVLRLPILLLSLLQSRPQLKLPEEQFGDEDGLGDDIDESTKDLPRDYGQNNVEEESSSGAAGSSFPVQMPDLMLPASVGSDNTTHQWLVRPVLATHGWDHDVDYEGVDVEGLFVLKDKVPLSFSGQVITKDKKDANNVLQMEISSSVRHGEKGKATLGFEMQSVGKDLAYTLRSEARFSNNFRRNKAMTGIAGLSITLLGDALVAGVKVEDKFVVNERFMLVVAGGLMARHNGDVAYGGSLEVLGRSLPTLRVSVMDWRGKLAVGCNVQSQIPVRNLVARANMNDQGAVSIRLNDSEQLQIALLVLIPLFKKLANWLFSPVACNCKPCKNRGLAFLYTSEKQVIYRDFKSSNILFDGLLLVFSLFLQNSEYLQSDFSIFVVCFEFATSVDTGVRLSTHTLPRLRDPFNNCLLRNSAYQYTQLVEVEREKGIESTIIIMSSSSNILNEPHGVEIAGKIMVAAVILLFMVVAFVLFLHLYSKCFLWRVDEETITFQPRVIRRHPRRRRRFVFAPGQDPIIYGSNHHQLGLDPSVLKSLPVLVFHPNEFKDGLECAVCLSEVVQGEKARILPRCNHGFHVDCIDMWFQSHSTCPLCRTLVTTYDQSTSSGAEQSDSVNFESSQTENSDDLSVLEFSNFPTHVLVWGDQTQFSSVGVSLENENSEVPPSNSSSASNCGIGGTSSDSRCNEMLVIDIPSELNSSPSSSNDEDEMMKPPMAARLRSLTRLLSREKKPISPCNPNSFDVELANSKDFDDGGIH*	1118

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev02g0090	1117	PANTHER	TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE	27	401	-	-
	Aev02g0090	1117	Pfam	Translocase of chloroplast 159/132, membrane anchor domain	427	675	IPR024283	-
	Aev02g0090	1117	SMART	ring_2	913	954	IPR001841	-
	Aev02g0090	1117	MobiDBLite	consensus disorder prediction	411	425	-	-
	Aev02g0090	1117	PANTHER	TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE	407	679	-	-
	Aev02g0090	1117	PANTHER	GTPASE, IMAP FAMILY MEMBER-RELATED	27	401	IPR045058	-
	Aev02g0090	1117	PANTHER	GTPASE, IMAP FAMILY MEMBER-RELATED	407	679	IPR045058	-
	Aev02g0090	1117	ProSiteProfiles	Zinc finger RING-type profile.	913	955	IPR001841	-
	Aev02g0090	1117	Pfam	Ring finger domain	912	955	IPR001841	-
	Aev02g0090	1117	Pfam	AIG1 family	111	253	IPR006703	GO:0005525
	Aev02g0090	1117	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	100	251	IPR027417	-
	Aev02g0090	1117	MobiDBLite	consensus disorder prediction	1088	1117	-	-
	Aev02g0090	1117	MobiDBLite	consensus disorder prediction	1016	1040	-	-
	Aev02g0090	1117	SUPERFAMILY	RING/U-box	893	961	-	-
	Aev02g0090	1117	CDD	RING-H2_EL5_like	912	955	-	-
	Aev02g0090	1117	ProSiteProfiles	AIG1-type G domain profile.	107	354	IPR006703	GO:0005525
	Aev02g0090	1117	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	881	960	IPR013083	-
	Aev02g0090	1117	Gene3D	-	76	339	IPR027417	-
	Aev02g0090	1117	MobiDBLite	consensus disorder prediction	384	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev02g0090	Aev-Chr2	531173	537731	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev02g0090	801	1090	C3H Transcription Factor Family	AT1G53820	45.161	2.10e-65	222

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev02g0090	-		-	han:110867663	611.298