Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g0004 ATGGGAGGGGAAGGGGGGAAGGGAAGGGTGTTGGTGTGTTCGAAGAAGAAGAAGAAGGGGAACAAGTCATCAGGTTCAGGGTCAGGAGGGGGTTTTGAGTCCCTAGGTCTATGTCCGAATGTGTTCAAGGGAATCAAGCGCAAGGGCTACAAAGTGCCCACTCCCATTCAGAGGAAGACAATGCCCCTCATCCTCTCCGGCTTCGATGTTGTTGCCATGGCCCGCACTGGCTCTGGTAAGACTGCTGCCTTTCTCGTCCCCATGCTTCACCGCCTCAACCAGCACCTTCCTCAGGGCGGCGTGAGAGCCCTCATCCTGTCTCCCACAAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTCCGAGTTAGTTTGCTAGTTGGTGGAGATAGCATGGAAAGCCAGTTTGAGGAGTTAGCTCAGAGTCCTGACATTATAATTGCTACCCCTGGTAGGCTTATGCACCACTTGTCCGAAGTCGATGATATGTCGTTGCGTACCGTGGAGTATGTTGTTTTTGATGAAGCTGATTGTTTATTTGGCATGGGTTTTGCTGAGCAGCTTCATCAAATTCTTGCTCAGCTGGGCGACAATCGTCAGACCTTGCTCTTCAGTGCTACTTTACCCAGTGCACTTGCTGAATTTGCTAAGGCTGGCTTGCGAGACCCTCAGCTGGTCCGCCTCGATTTGGAGACTAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAAGAGAAGTATGCCGCATTGCTCTACTTGATCAGGGAGCAAATTGGTTCTGATCAGCAGACATTAATTTTTGTTTCCACAAAGCACCATGTGGAGTTTCTCAACTTACTGTTTAGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATACATGTATCAAGGTTTAGGGCAAGAAAAACAATGTTGTTGATTGTGACGGATGTCGCAGCTCGTGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCTCCTAAGCCTAAAATTTTTGTTCATCGAGTTGGAAGGGCAGCAAGGGCTGGTCGTACTGGTACTGCTTATTCCTTTGTGACTTCAGAGGATATGGCTTACCTTTTGGATCTTCACTTGTTTCTCTCAAAACCAATAAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGAATATGGATGGAGTAATGTCAAAAGTTGATCAGGCAATGGCAAATGGAGAAACAATTTATGGCCGTTTCCCACAAAAGGTCATTGACCTTGTTTCTGAGAGAGTTAGGGAAATTATTGATACTTCTGCAGAACTTGACTCATTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTGCCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCCCGTGAGGGTCTGCATCCGATTTTCAAGAATGTATTGGAAACAGGGGAGTTAATGGCACTTGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATCTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCTGCAGGGCCCTTCTGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAACCTAAGAGTGATAAGGAAAAGGATGAAATTCAAACGAAAATTACTCCTTCCATGGAGAAAGGGAGAAAAGCAGCATGTGGTTATAAGAGAAAGCCACAATGTTTCAAGGATGAGGATTACTACATAAGTTCAATTCCTAAAAATCAACACATGGAGTCCGGCCTTTCAGTAAAAGCTAATGAAGAATTTTCCTCTAAAAGGTTGGATGCTGCTGTCCTAGATCTGGTTGCGGATGATAGTGCTGGCATTCAGAAACAACGATCTGTATATCACTGGGACAAGAGGAGTAAAAAATACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAAAGTGGTGCGAAAACAAAGGCAACCAAGACCGGCATATATAAGAAGTGGAAAGAACGGTCACACAGTAAGGTATCTCTAAAGGGGACAAGTAATGGGGGTGATGCCCAGGAATCCACAAATTTGAAGGGATCTTACAGAGGAGGTCATAGAAAATTTAAAGGCAGCAAGAAGCAGCAATTCACGCCCAATTCTTATCTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGCAAAAAGCTAATAGAATTTCTCATATAAAGAGCAAGTCGCAAAAGGGTAAAAGATTTGGTAAACATGAGAAAAAAAAGAAATGTTTAAATAGAGTCAGTTAG 2382 0.4383 MGGEGGKGRVLVCSKKKKKGNKSSGSGSGGGFESLGLCPNVFKGIKRKGYKVPTPIQRKTMPLILSGFDVVAMARTGSGKTAAFLVPMLHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQIGSDQQTLIFVSTKHHVEFLNLLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMDGVMSKVDQAMANGETIYGRFPQKVIDLVSERVREIIDTSAELDSLQRTCKNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHLQGPSGQWVDVMKRKRAIHENIINLVHEQQPKSDKEKDEIQTKITPSMEKGRKAACGYKRKPQCFKDEDYYISSIPKNQHMESGLSVKANEEFSSKRLDAAVLDLVADDSAGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHSKVSLKGTSNGGDAQESTNLKGSYRGGHRKFKGSKKQQFTPNSYLRSEIKDMDQIRKERQQKANRISHIKSKSQKGKRFGKHEKKKKCLNRVS* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g0004 793 CDD DEADc_DDX54 32 235 - -
Aev02g0004 793 Pfam Helicase conserved C-terminal domain 258 368 IPR001650 -
Aev02g0004 793 Gene3D - 249 481 IPR027417 -
Aev02g0004 793 MobiDBLite consensus disorder prediction 697 793 - -
Aev02g0004 793 MobiDBLite consensus disorder prediction 766 793 - -
Aev02g0004 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 386 IPR027417 -
Aev02g0004 793 SMART ultradead3 49 256 IPR014001 -
Aev02g0004 793 CDD SF2_C_DEAD 253 377 - -
Aev02g0004 793 Gene3D - 12 237 IPR027417 -
Aev02g0004 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 58 IPR014014 GO:0003724
Aev02g0004 793 Pfam DBP10CT (NUC160) domain 636 697 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Aev02g0004 793 SMART helicmild6 287 368 IPR001650 -
Aev02g0004 793 Pfam DEAD/DEAH box helicase 54 221 IPR011545 GO:0003676|GO:0005524
Aev02g0004 793 SMART DBP10CT_2 636 698 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Aev02g0004 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 234 IPR014001 -
Aev02g0004 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 258 407 IPR001650 -
Aev02g0004 793 MobiDBLite consensus disorder prediction 704 722 - -
Aev02g0004 793 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 15 784 - -
Aev02g0004 793 MobiDBLite consensus disorder prediction 749 765 - -
Aev02g0004 793 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 15 784 - -
Aev02g0004 793 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g0004 Aev-Chr2 18413 25174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g0004 32 401 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 2.16e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g0004 K14808 - gmx:100806274 1322.76