Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3160 ATGAGCAGTAGTGGAGGAGGAGGCACTTATGATCATGATCATGATGGCAACTCAGCATCACAACATCACAGCCACATGATGATGATGGGTTGGGAGGAGAAGAAAGAGAAAGAGAAGGAGAAGGTGCGGTACAGAGAGTGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAACGCCAGAGACGGGTGCGGGGAGTTCATGCCCAGCGGCGAAGAGGGGACCATGGAAGCCCTCAACTGCTCTGCCTGCCACTGCCACCGAAACTTCCACAGACGAGACGACATGCATATGCATATGCATATGCTCCTCCACCCCTTTCACTACCCACTCATCTCCTCATCATCACCACATCCACATCTGTACGACGATGGGAGGAGCAGGAAGTGGGCCCAGCAGAAGCCCAGCATGGTGGCGGAGAAGAAGAACAAGAGGAAGAGGTTCAGGACCAAGTTCACGGAGGAGCAGAAGGAGAAGATGCTGGGGTTTGCGGAGAAGGTGGGGTGGAAGATCCAGAAGCAGGAGGAGGCGGTGGTGCACCACTTCTGCCAAGACATTGGGGTCAAGAGAAGAGTCCTCAAGGTTTGGATGCATAACAATAAGCACAATCATCGTCGTCCCACTCCCACTCATAACAACAACAATCCCCCCCCACCACCAACCGCTTAA 666 0.542 MSSSGGGGTYDHDHDGNSASQHHSHMMMMGWEEKKEKEKEKVRYRECLKNHAAAMGGNARDGCGEFMPSGEEGTMEALNCSACHCHRNFHRRDDMHMHMHMLLHPFHYPLISSSSPHPHLYDDGRSRKWAQQKPSMVAEKKNKRKRFRTKFTEEQKEKMLGFAEKVGWKIQKQEEAVVHHFCQDIGVKRRVLKVWMHNNKHNHRRPTPTHNNNNPPPPPTA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3160 221 Pfam ZF-HD protein dimerisation region 41 93 IPR006456 -
Aev01g3160 221 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 43 93 IPR006456 -
Aev01g3160 221 MobiDBLite consensus disorder prediction 1 25 - -
Aev01g3160 221 ProSitePatterns Zinc finger C2H2 type domain signature. 80 104 IPR013087 -
Aev01g3160 221 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 19 204 - -
Aev01g3160 221 MobiDBLite consensus disorder prediction 199 221 - -
Aev01g3160 221 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 204 - -
Aev01g3160 221 SUPERFAMILY Homeodomain-like 136 205 IPR009057 -
Aev01g3160 221 Gene3D - 128 204 - -
Aev01g3160 221 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 93 IPR006456 -
Aev01g3160 221 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 144 200 IPR006455 -
Aev01g3160 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3160 Aev-Chr1 32551989 32552654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3160 38 200 ZF-HD Transcription Factor Family AT1G14440 51.309 4.86e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aev01g3160 ZF-HD_dimer 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3160 - - gmx:100803037 195.282