Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3143 ATGAAACGAATCGATGATGTCACCGCCACCGCCACCGCCGCCACTGCAGCCAAGCCAGTCTTCCTAACCAAAGCCCAGCGCGAGCAGTTAGCTCTCCAGCGCCGCCACGAAGAAATTGCTGAGCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGTAACCGCCCCTCCGATTCCTCTGCCGATCCCAAACCCTCCTCCGATCCCGACCGCCGTGACCGCGACCGAGATAGAGATAGGGATAGGGACAGAGACAGAGATAGAGACAGGGACAGGGACAGGGACAGGGACCGTGACCGCGAGCGAGACAGAGAACGGGAACGGGAAAAGGAACGAGAGCGCGATAGGGCACGCGATCGGGACCGCGAAACGGAGAGGCGTAACCGTGAGAGGGAGCGCGAAGAGGAAGGTAGGGCTCGGGAGCGAGCACGGCTCGAGAAATTGGCGGAGCGTGAGCGGGAGAAGGAGCTTGATGCCATAAAGGAGCAGTACCTGGGGTCGAAGAAGCCGAAGAAGCGCGTGATTAAGCCTAGCGAGAAGTTCCGGTTCTCGTTTGACTGGGAGAACACGGAGGACACCTCCCGCGACATGAACGCCCTCTATCAGAACCCTCACGAGGCCCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGAATGGACCGCCGTGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATTCGCAAGAAGGACGGCGTCGAGGAGAAGCCTGAGGAGGCCGACGCCCAGCGTCGCAAGGAGGCCGCCGCGGACCTGTACGATACGTTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAGGAGATGACGGAGAGGGACTGGCGCATCTTCAGGGAGGACTACAACATCTCGTACAAGGGTTCCAAAATCCCTCGCCCTATGCGGAGCTGGGTTGAGAGCAAGCTCAGCCTCGAGCTCTTGAAGGCTGTGGAGAAAGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCCGCTATTCCTCTTGGGCTGCAGCAGCGCGATGTTATCGGCATTGCAGAGACCGGTTCTGGTAAGACCGCTGCTTTTGTTCTTCCTATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGCGAGGAGAATGAGGCGGAGGGCCCCTATGCTGTTGTCATGGCTCCTACTCGCGAGCTCGCCCAGCAGATTGAGGATGAGACTGTCAAGTTTGCCCAGTATTTGGGAATCAAGGTTGTGTCGATTGTTGGTGGGCAGTCTATTGAGGAACAAGGGTTCAAGATCAGGCAAGGTTGTGAGATCGTCATTGCCACTCCTGGTCGTTTGATCGATTGCTTGGAGCGCCGCTATGCTGTGCTGAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGTTTTGAGCCACAGGTGATGGGTGTGTTGGATGCCATGCCTTCCAGCAATTTGAAACCTGAGAACGAAGATGAAGAGCTTGATGAGAAGAAGATCTATCGGACCACTTATATGTTCAGCGCCACCATGCCTCCGGCAGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAACCCTGTCGTGGTCACCATTGGCACAGCTGGAAAGGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCCGAGAAATTCCATAAGCTGCAGAGACTGCTTGACGAGCTGAATGACAAGACTGCTATTGTGTTTGTTAACACCAAGAAGAATGCGGACATGGTTGCCAAGAATCTGGACAAGGAAGGGTATCGCGTGACTACATTGCACGGTGGGAAGTCGCAGGAGCAGAGAGAGATCAGTCTGGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCAACGGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCACGTCATAAACTATGATATGCCTGGGAATATTGAGATGTACACTCACCGTATCGGACGTACTGGACGTGCAGGAAAGACCGGTGTGGCTACGACATTCCTCACTCTGCAGGACAGTGATGTCTTCTATGACCTCAAACAGATGCTTATTCAGAGCAACAGCCCTGTTCCACCTGAATTGGCGAGGCACGAAGCCTCCAAGTTCAAGCCAGGGAGTATTCCTGACAGACCGCCTAGACGGAATGACACGGTGTTTGCACATTGA 2190 0.5521 MKRIDDVTATATAATAAKPVFLTKAQREQLALQRRHEEIAEQKRRQEQLLSRNRPSDSSADPKPSSDPDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERDREREREKERERDRARDRDRETERRNREREREEEGRARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3143 729 Coils Coil 99 157 - -
Aev01g3143 729 CDD SF2_C_DEAD 547 676 - -
Aev01g3143 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 688 IPR027417 -
Aev01g3143 729 CDD DEADc_DDX23 320 536 - -
Aev01g3143 729 MobiDBLite consensus disorder prediction 223 257 - -
Aev01g3143 729 SMART helicmild6 586 667 IPR001650 -
Aev01g3143 729 Coils Coil 553 573 - -
Aev01g3143 729 MobiDBLite consensus disorder prediction 704 729 - -
Aev01g3143 729 Gene3D - 540 727 IPR027417 -
Aev01g3143 729 SMART ultradead3 328 550 IPR014001 -
Aev01g3143 729 Coils Coil 22 42 - -
Aev01g3143 729 MobiDBLite consensus disorder prediction 33 172 - -
Aev01g3143 729 PANTHER - 91 722 - -
Aev01g3143 729 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 464 472 IPR000629 -
Aev01g3143 729 Pfam DEAD/DEAH box helicase 334 524 IPR011545 GO:0003676|GO:0005524
Aev01g3143 729 MobiDBLite consensus disorder prediction 697 729 - -
Aev01g3143 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 535 IPR014001 -
Aev01g3143 729 MobiDBLite consensus disorder prediction 33 51 - -
Aev01g3143 729 MobiDBLite consensus disorder prediction 63 168 - -
Aev01g3143 729 Coils Coil 221 247 - -
Aev01g3143 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 706 IPR001650 -
Aev01g3143 729 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 309 337 IPR014014 GO:0003724
Aev01g3143 729 Gene3D - 270 539 IPR027417 -
Aev01g3143 729 Pfam Helicase conserved C-terminal domain 559 667 IPR001650 -
Aev01g3143 729 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3143 Aev-Chr1 32398073 32400262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3143 319 703 Eukaryotic Initiation Factors Gene Family AT1G72730 32.902 5.12e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3143 K12858 - gmx:100799264 1131.32