Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3134 ATGATGGGTGAATCAGACAACGAGTCAGGGGGAGGGGGCAGAGAGCAGGAGAGGCTGCTTCCAATAGCGAACGTGAGCAGGATAATGAAGAAGGCGCTGCCAGCAAACGCCAAGATCTCAAAGGAAGCGAAAGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACAGGGGAGGCCTCCGACAAGTGCCAGAAGGAGAAGAGGAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACCCTTGGATTCGAGGACTACGTCGACCCACTCAAGATCTATCTGCACAAGTACAGGGAGCTCGAGGGCGACAAGGCTGCTGTGCTTGCGGGCAGGCCACAACAGGGCCCTGATCATGCTGCCCATGCTGATGCCTTGCCTTATGGTGTTGCTATGCCATCATCTTCATCCCCTATGATGACGATGATGATGATGATGATGGGCCCTCATCAAGGCCACATGTATGCATCTGCCAGTAATGGATCTCCATCCTCTGCAACACCTAATTCTAGATAA 528 0.5379 MMGESDNESGGGGREQERLLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYRELEGDKAAVLAGRPQQGPDHAAHADALPYGVAMPSSSSPMMTMMMMMMGPHQGHMYASASNGSPSSATPNSR* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3134 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 83 IPR003958 -
Aev01g3134 175 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Aev01g3134 175 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Aev01g3134 175 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Aev01g3134 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 11 155 - -
Aev01g3134 175 Gene3D Histone, subunit A 8 129 IPR009072 GO:0046982
Aev01g3134 175 SUPERFAMILY Histone-fold 16 120 IPR009072 GO:0046982
Aev01g3134 175 ProSitePatterns NF-YB/HAP3 subunit signature. 50 66 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aev01g3134 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3134 Aev-Chr1 32343919 32344446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3134 2 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.148 1.73e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aev01g3134 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3134 K08065 - gmx:100778034 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3134 01 32343919 32344446 Aev04g0079 04 521678 522208 PCT