LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g3080	ATGAGTAGTTGTTGTTACTTGTTACTGAGGGAGACAGTTATTATAATTATAGTAATGGAGGGTAATTGCAGTGCTGGCAATAGTAGCACAATGGGTTTAGGAGAGAATAGTAATACTACTGGTAGTGGGCTCTGTCCAATGATGATGATGCCTTTTGTGACTACTTCTTTTCATCTTAATAATACTAATCCTAACACTAGTGTCTTCCATCCCGTGCTCTGCACTTACTATAACAACAACTACAACAGTACAGGCACCTCCTCCACCATGCTCCACACTCATAACAACAACTCCAACTCCAACACGGGGGGGCTAGGGTATTATTCCATGGAGATTGATCACAACAACAATGGAACCTCTTCTTCTTCAGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACCTCAATTGTCAAAAGGTAGGAGCACCGGCAGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCGGCTTCAGCGGTGAGAACGGGAATGGTAGGAGGAGGAGGTTGCATAGGTGAGGATCCAGCGCTGGATCAGTTCATGGAAGCCTACTGTGAGATGCTGATAAAGTACGAGCAGGAGCTCTCTAAGCCCTTCAACGAAGCCATGCTCTTCCTTCAAACCATCCACTCCCAGTTCAACTCTCTCGCCGTTTCTCCTTCCCACTTTGCTAGTGATAGGAATGGATCATCTGAAGAGGACGCCGATCTGCGGAACAATGCAATAGATCCGCAGGCGGAGGAGGGGGAACTGAAGGGTCAGCTTCTGCGCAAGTACAGCGGATACCTGGGGAGCCTGAAGCAGGAATTCATGAAAAAGAGGAAAAAAGGGAAACTGCCTAAAGAAGCAAGGCAACAGTTACTTGAATGGTGGAGCAGGCATTACAAGTGGCCTTACCCATCTGAATCACAGAAGGTGGCACTGGCAGAGGCAACAGGGCTGGACCAGAAGCAGATAAACAACTGGTTTATCAATCAAAGGAAAAGGCATTGGAAGCCCTCAGAAGACATGCAGTATGTGGTGGTTGATCCATCATCAGCCCATCCGCATTATTACATGGACAATCACAATCACAATCTTCTTCTTCCCAATCCCTTCCCTCCTATGGATCTCTCCCACCACAACCACACAATGCTTTGA	1161	0.4729	MSSCCYLLLRETVIIIIVMEGNCSAGNSSTMGLGENSNTTGSGLCPMMMMPFVTTSFHLNNTNPNTSVFHPVLCTYYNNNYNSTGTSSTMLHTHNNNSNSNTGGLGYYSMEIDHNNNGTSSSSAVKAKIMAHPHYHRLLAAYLNCQKVGAPAEVVARLEEACAASAVRTGMVGGGGCIGEDPALDQFMEAYCEMLIKYEQELSKPFNEAMLFLQTIHSQFNSLAVSPSHFASDRNGSSEEDADLRNNAIDPQAEEGELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQYVVVDPSSAHPHYYMDNHNHNLLLPNPFPPMDLSHHNHTML*	387

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev01g3080	386	ProSiteProfiles	ELK domain profile.	257	277	IPR005539	GO:0003677
Aev01g3080	386	SMART	KNOX2_2	174	225	IPR005541	GO:0003677\|GO:0005634
Aev01g3080	386	ProSitePatterns	'Homeobox' domain signature.	315	338	IPR017970	GO:0000981\|GO:0006355
Aev01g3080	386	SMART	HOX_1	279	344	IPR001356	GO:0003677
Aev01g3080	386	Pfam	ELK domain	257	278	IPR005539	GO:0003677
Aev01g3080	386	Pfam	Homeobox KN domain	297	336	IPR008422	GO:0003677\|GO:0006355
Aev01g3080	386	SMART	KNOX1_2	123	167	IPR005540	GO:0003677\|GO:0005634
Aev01g3080	386	Pfam	KNOX2 domain	177	223	IPR005541	GO:0003677\|GO:0005634
Aev01g3080	386	SMART	ELK_2	257	278	IPR005539	GO:0003677
Aev01g3080	386	Pfam	KNOX1 domain	124	164	IPR005540	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g3080	Aev-Chr1	32079204	32082854	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g3080	107	386	Homeobox Transcription Factor Family	AT1G62360	68.792	2.59e-123	359

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Aev01g3080		KNOX2	1.7e-21	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g3080	-		-	gmx:547796	464.922

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev01g3080	01	32079204	32082854	Aev04g0147	04	936287	941537	PCT

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