Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3080 ATGAGTAGTTGTTGTTACTTGTTACTGAGGGAGACAGTTATTATAATTATAGTAATGGAGGGTAATTGCAGTGCTGGCAATAGTAGCACAATGGGTTTAGGAGAGAATAGTAATACTACTGGTAGTGGGCTCTGTCCAATGATGATGATGCCTTTTGTGACTACTTCTTTTCATCTTAATAATACTAATCCTAACACTAGTGTCTTCCATCCCGTGCTCTGCACTTACTATAACAACAACTACAACAGTACAGGCACCTCCTCCACCATGCTCCACACTCATAACAACAACTCCAACTCCAACACGGGGGGGCTAGGGTATTATTCCATGGAGATTGATCACAACAACAATGGAACCTCTTCTTCTTCAGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACCTCAATTGTCAAAAGGTAGGAGCACCGGCAGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCGGCTTCAGCGGTGAGAACGGGAATGGTAGGAGGAGGAGGTTGCATAGGTGAGGATCCAGCGCTGGATCAGTTCATGGAAGCCTACTGTGAGATGCTGATAAAGTACGAGCAGGAGCTCTCTAAGCCCTTCAACGAAGCCATGCTCTTCCTTCAAACCATCCACTCCCAGTTCAACTCTCTCGCCGTTTCTCCTTCCCACTTTGCTAGTGATAGGAATGGATCATCTGAAGAGGACGCCGATCTGCGGAACAATGCAATAGATCCGCAGGCGGAGGAGGGGGAACTGAAGGGTCAGCTTCTGCGCAAGTACAGCGGATACCTGGGGAGCCTGAAGCAGGAATTCATGAAAAAGAGGAAAAAAGGGAAACTGCCTAAAGAAGCAAGGCAACAGTTACTTGAATGGTGGAGCAGGCATTACAAGTGGCCTTACCCATCTGAATCACAGAAGGTGGCACTGGCAGAGGCAACAGGGCTGGACCAGAAGCAGATAAACAACTGGTTTATCAATCAAAGGAAAAGGCATTGGAAGCCCTCAGAAGACATGCAGTATGTGGTGGTTGATCCATCATCAGCCCATCCGCATTATTACATGGACAATCACAATCACAATCTTCTTCTTCCCAATCCCTTCCCTCCTATGGATCTCTCCCACCACAACCACACAATGCTTTGA 1161 0.4729 MSSCCYLLLRETVIIIIVMEGNCSAGNSSTMGLGENSNTTGSGLCPMMMMPFVTTSFHLNNTNPNTSVFHPVLCTYYNNNYNSTGTSSTMLHTHNNNSNSNTGGLGYYSMEIDHNNNGTSSSSAVKAKIMAHPHYHRLLAAYLNCQKVGAPAEVVARLEEACAASAVRTGMVGGGGCIGEDPALDQFMEAYCEMLIKYEQELSKPFNEAMLFLQTIHSQFNSLAVSPSHFASDRNGSSEEDADLRNNAIDPQAEEGELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQYVVVDPSSAHPHYYMDNHNHNLLLPNPFPPMDLSHHNHTML* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3080 386 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Aev01g3080 386 SMART KNOX2_2 174 225 IPR005541 GO:0003677|GO:0005634
Aev01g3080 386 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Aev01g3080 386 SMART HOX_1 279 344 IPR001356 GO:0003677
Aev01g3080 386 Pfam ELK domain 257 278 IPR005539 GO:0003677
Aev01g3080 386 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Aev01g3080 386 SMART KNOX1_2 123 167 IPR005540 GO:0003677|GO:0005634
Aev01g3080 386 Pfam KNOX2 domain 177 223 IPR005541 GO:0003677|GO:0005634
Aev01g3080 386 SMART ELK_2 257 278 IPR005539 GO:0003677
Aev01g3080 386 Pfam KNOX1 domain 124 164 IPR005540 GO:0003677|GO:0005634
Aev01g3080 386 CDD homeodomain 289 341 IPR001356 GO:0003677
Aev01g3080 386 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 19 368 - -
Aev01g3080 386 Gene3D - 282 344 - -
Aev01g3080 386 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Aev01g3080 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 368 - -
Aev01g3080 386 SUPERFAMILY Homeodomain-like 279 356 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3080 Aev-Chr1 32079204 32082854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3080 107 386 Homeobox Transcription Factor Family AT1G62360 68.792 2.59e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aev01g3080 KNOX2 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3080 - - gmx:547796 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3080 01 32079204 32082854 Aev04g0147 04 936287 941537 PCT