Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3036 ATGGACGCTCACACTTTCACTCTTTCGGCCTCGCCTCTCTCAAATTTGCGTGTCCCTTGTTCCTCTCAGAACCCAACTCTATCTTGCTATCTCCCTCCTTCACATAACTTTAAACGATTCTCCCCTCCTCAATGCACTCTCTCAAACTTCAGAACCCCACAAACACTTACCAAACATTCTCCCATAACCCAGCAAGCTGATGATGATGATATTGCTTTCAACTACGCTCCCACTTTGAGAGAATTGTGCCAACCTCATGTTCCCAGCCATGTTTTGCAAAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGAAGGCATTGCCTTATCTCTTTTCCGGGCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTACTTTTAATCTATTCCATCATCAACTCTGCAAAATCTTCTGTGCAAGCAATAGTTTTGGTGCCCACCCGTGAACTTGGCATCCAAGTAACTAAAGTTGCTAGGGTGTTGGCAGCAAAGCCAACTGGAGTCGAGGGGGATCAGAAATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTAAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAATAGTGATCGCAACAGTAGGCAGTTTGTGCCAAATGCTTGAAAGACAAACTTTCATGCTTGAATCTGTGCGGGTGCTGATAGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTCAGCTCTCTTCGAAAGCTTTTGACATCATATTCATCCTGCAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAGACGATTTCTCCATGACTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCTTGTGTCATAGATTTATAATATGCAATACCAAAAGGAAATTGCAAAGCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAATCCAAAAAGGCTGGAGATGCTCCCTCGACATCCATTCTCATTGACTTTCTGAAGGCATCATACAAAGGGCCTTTAGATATCGTCCTTCTCGAGGATGACATGAATTTCAACTCCCGAGCAGTTTCACTGCTGGAGGTTAGAAAAGGAGGTGGTTATCTCCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCACATTTACAACTTTGATTTGCCAAAGACTGCCATAGATTATCTTCACCGAGCAGGGAGGACATGCAGGAAACCCTTTTCTGACATGAAGTGTACTGTTACTAGCATTATAGTTCCAGCAGAGCGGTTTGTTCTTCAGAAATATGAAAATGAATTGATGTTTAGCTGTGAAGAACTTATTCACTAA 1440 0.4326 MDAHTFTLSASPLSNLRVPCSSQNPTLSCYLPPSHNFKRFSPPQCTLSNFRTPQTLTKHSPITQQADDDDIAFNYAPTLRELCQPHVPSHVLQRMEEIGYVMPTDVQRKALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINSAKSSVQAIVLVPTRELGIQVTKVARVLAAKPTGVEGDQKSCTIMALLDGGTLRRHKSWLKAEPPTIVIATVGSLCQMLERQTFMLESVRVLIVDEVDFIFNSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNTKRKLQSLLSLIQSDAPESGIIFVGEQSEKSKKAGDAPSTSILIDFLKASYKGPLDIVLLEDDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPAERFVLQKYENELMFSCEELIH* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3036 479 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 478 - -
Aev01g3036 479 CDD DEADc 91 286 - -
Aev01g3036 479 Gene3D - 307 477 IPR027417 -
Aev01g3036 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 445 IPR027417 -
Aev01g3036 479 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 45 478 - -
Aev01g3036 479 SMART helicmild6 359 443 IPR001650 -
Aev01g3036 479 Pfam DEAD/DEAH box helicase 104 277 IPR011545 GO:0003676|GO:0005524
Aev01g3036 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 479 IPR001650 -
Aev01g3036 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 293 IPR014001 -
Aev01g3036 479 SMART ultradead3 99 309 IPR014001 -
Aev01g3036 479 CDD SF2_C_DEAD 312 441 - -
Aev01g3036 479 Pfam Helicase conserved C-terminal domain 322 441 IPR001650 -
Aev01g3036 479 Gene3D - 78 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3036 Aev-Chr1 31834888 31837814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3036 57 468 Eukaryotic Initiation Factors Gene Family AT1G72730 24.882 1.67e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3036 - - ahf:112763379 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3036 01 31834888 31837814 Aev01g3036 01 31834888 31837814 ECH