Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3035 ATGGCAACTTTCACAACCTCTTCATCCTCTTCCCCTCCTCCGTCACTGTCACTGTCACTGTCACACATTCCGCCCATTTCAGCTCCTTCTTCTTCTGCCGCATTCGACGACTGCTCTGAGGACGTTTGCAGCATTTGTCTCGAGCCCTTCACCACTCATGACCCTGCCACTATTACCAGTTGCAAACATGATTATCATCTGCATTGTATTATTGAATGGTCACAGAGAAGCAAGGAGTGCCCAATATGTTGGCAGTTACTTAGCTTCCAGGAGCTTCTAGCTGCAGTGGAGCCTGAAAAACGCTTAAGATCAAGAAATGTATCTTCATCTACATTCACTAATTCTCGTAGCCCCCTTGATCGCCGTATTGATGATCAAGATGATTCTAGTTCAGATGACTCTGATTATTATGAACCACTAATGCAGCACCGGCACCTAGTTGCTGCTACTAGTAGAGCCCGTTATGTTCACATACGGGAAAGGCAGAGATATTCTGGAGCAGGTCCATCAGAGGCTTTTGTTTCTAACTCCTATTTGTCTGCTTCTGGGAAACAACGAACACTCACAACTTCACCATCTTCAACTTCTGCTTTTTCTCCTGTTGATTCGGTTGCAAGAAATACTATCTCTGAGAGTAATGCCCCTCCCAAACCAAGCCGGCCACCACTTGAGAGAGCTAGGAAACTAAACACTTCTGAGATGCCGTCCTTCCCTGAGTCCATCAAATCCAAGATTTCTGCTGCTTCAGCCAGATACAAGGAATCAATCTCTAAAAGTACGCGGGGTCTCAAAGAGAAGTTAATTGCACGCAATGCCTCAGTGAAGGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCGTTGCTGGTGTTGCACGCATGATTAAACGCCTTGATCTGACCTCAAAACGGTCTAATTCAGGCATCCCCATGAAAGGGAAATCTGTTCAAGATAATAACGTTATTGGGCAGTCTCCTACGGAAGAAAACAGTGCAGTTTTCGTTTGTCATGTTAGTTCAGACAGTCCCGCACTGGTTTCTACTACGGTTGCTGGTGAAGCTGGAATTCCCCCTCCTTCAAATGTCCAGAGTACACATGATGCTGTGAAGACATAA 1119 0.4584 MATFTTSSSSSPPPSLSLSLSHIPPISAPSSSAAFDDCSEDVCSICLEPFTTHDPATITSCKHDYHLHCIIEWSQRSKECPICWQLLSFQELLAAVEPEKRLRSRNVSSSTFTNSRSPLDRRIDDQDDSSSDDSDYYEPLMQHRHLVAATSRARYVHIRERQRYSGAGPSEAFVSNSYLSASGKQRTLTTSPSSTSAFSPVDSVARNTISESNAPPKPSRPPLERARKLNTSEMPSFPESIKSKISAASARYKESISKSTRGLKEKLIARNASVKELSKGVQREMNAGVAGVARMIKRLDLTSKRSNSGIPMKGKSVQDNNVIGQSPTEENSAVFVCHVSSDSPALVSTTVAGEAGIPPPSNVQSTHDAVKT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3035 372 MobiDBLite consensus disorder prediction 104 137 - -
Aev01g3035 372 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 342 - -
Aev01g3035 372 MobiDBLite consensus disorder prediction 182 201 - -
Aev01g3035 372 SMART ring_2 43 83 IPR001841 -
Aev01g3035 372 ProSiteProfiles Zinc finger RING-type profile. 43 83 IPR001841 -
Aev01g3035 372 MobiDBLite consensus disorder prediction 350 372 - -
Aev01g3035 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 88 IPR013083 -
Aev01g3035 372 Pfam Ring finger domain 42 83 IPR001841 -
Aev01g3035 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 342 - -
Aev01g3035 372 SUPERFAMILY RING/U-box 36 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3035 Aev-Chr1 31832085 31834231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3035 40 91 C3H Transcription Factor Family AT3G02290 48.077 2.55e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3035 K19043 - gmx:100785684 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3035 01 31832085 31834231 Aev01g3035 01 31832085 31834231 ECH