Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g3021 ATGGCTCTGACTCTGAGTGCACCTCGCATTCCATGGCTTCGGCATCCCACAACCACAAAGCTTGGAATCTCAAAGCCAGTGACCGCTTTTTCAACGCCAACGGAATCTCCAAAGATTCCTTCTTCACTGTCGATTTCTGCTTCTCTACCATGGTTTTCCTGCAGAGCCAGCTTCAGCTCTTCCACCGAATACAATTCGTCTTCTTCAACCAAGATCATCATTAAAGGGCTTCCCCTTTCAACTACTGAAGGACGTTTGATGAAGGTGTTTTCAGTGTTTGGTGAAGTTACTCAAGTCAAGCTTCACATAGATAAAGAATCCGGGCAGTCTTTAGGATCTGCACATATTTGGTTTGTCAAGGAACAATCTGCGCAATTGGCTGTGAAAGAGATGAGTGGAAAGGCTGCCTGGTACGATAGACCGTACCGTAGCATACGATTGTCGCCTTGTCGGAGGGAGCTCAGAGCCAACGAAGGAGTTGGAAGACGATCAGCAACAAGGCAACAACAACTAATAGAATCAAAACTGAGAAAGATGGTGAATGTGGTGAACGCGTTGATGTTGACTAGGATGTTGACTCGGGAGTACCCTGTGGCGGCGGTTGGGAACGAGATAGCGTTTGGATCGGTGTGGTGGTTCGTGTATGCGGGCATATCGTGTTTCCTTGTTCTCTTTGCGGGGATCATGTCCGGTCTCACCCTCGGTCTCATGTCTCTCGGCCTCGTCGACCTCGAGATTCTTCAGCGCAGTGGTTCTCCTTCCGAGAAGAAGCAAGCTGCGGTTATACTTCCCGTGGTTCAGAAACAGCACCAGCTTCTTGTCACTCTGCTTCTCTGTAATGCTGCCGCCATGGAGGCTCTTCCTATATACCTAGATAAGCTATTCAATCAGTTTGTTGCTATCATTCTCTCAGTGACTTTCGTTCTATTTTTCGGGGAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCTAACTTTGTGTGGCTTGTGCGAATTTTGATGATAATATGCTATCCAGTTTCCTATCCAATTGGAAAGGTTCTGGACTATCTATTGGGGCACAACGAGGCTTTATTTAGGCGAGCTCAGTTGAAAGCTCTTGTCTCAATTCACAGCCAGGAGGCTGGGAAAGGTGGTGAGCTTACACATGATGAGACAACAATTATCAGTGGAGCGCTTGATTTGACTGAAAAGACTGCTGAGGAGGCTATGACTCCTATCGAATCAACATTTTCTTTGGATGTTAATTCAAAATTGGACTGGGAGGCAATGGGAAAAATTCTTGCTCGTGGGCACAGCAGGGTTCCTGTCTATTCTGGAAATCCAAGGAATATTATTGGTCTTCTACTTGTCAAAAGTCTACTAACTGTACGGCCAGAAACAGAGACCCCTGTCAGTGCTGTATCCATCCGGAGAATTCCACGGGTTCCATCGGATATGCCTCTCTATGATATACTGAACGAGTTCCAAAAGGGCAGTAGTCATATGGCTGCTGTTGTTAAGGTTAAGGGAAAAGGCAAAGACACTCCACGAATAATTGATGAAGAGAATAATGAAGAAAACAAAAGTATTGATGGGGATTCACAGTTGACTACTCCATTACTACAGAAGAAGGATGATAAATCAGAAAGTGTTGTTGTTGATATTGACAAGTCTTCAAGGCCTCCTAGTGTTAATAAACTAACTAGCACGGCAAATGGCCCCTTCTCTTCAGAGAATATTGAAGATGGTGAAGTGATTGGTATTATCACTTTGGAAGATGTGTTTGAAGAACTTCTGCAAGAAGAAATTGTTGATGAGACAGATGAATATGTTGACGTTCATAAGAGAATACGTGTGGCCGCAGCTGCAGCTGCTTCCTCAGTGGCACGAGCTCCATCAACCCGAAGGTTGACTAGCCAAAAAGGAGCAGGAGGCCAAAGTAAGCCCGGGCAAACACCGAAGAAATCTGCAGAGGAGGATGGATTGAATTCTGGGAGGTAG 1998 0.4545 MALTLSAPRIPWLRHPTTTKLGISKPVTAFSTPTESPKIPSSLSISASLPWFSCRASFSSSTEYNSSSSTKIIIKGLPLSTTEGRLMKVFSVFGEVTQVKLHIDKESGQSLGSAHIWFVKEQSAQLAVKEMSGKAAWYDRPYRSIRLSPCRRELRANEGVGRRSATRQQQLIESKLRKMVNVVNALMLTRMLTREYPVAAVGNEIAFGSVWWFVYAGISCFLVLFAGIMSGLTLGLMSLGLVDLEILQRSGSPSEKKQAAVILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKLFNQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFVWLVRILMIICYPVSYPIGKVLDYLLGHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKGKDTPRIIDEENNEENKSIDGDSQLTTPLLQKKDDKSESVVVDIDKSSRPPSVNKLTSTANGPFSSENIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSTRRLTSQKGAGGQSKPGQTPKKSAEEDGLNSGR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g3021 665 Gene3D - 527 605 IPR046342 -
Aev01g3021 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 134 IPR000504 GO:0003723
Aev01g3021 665 MobiDBLite consensus disorder prediction 555 578 - -
Aev01g3021 665 ProSiteProfiles CNNM transmembrane domain profile. 208 390 IPR002550 -
Aev01g3021 665 MobiDBLite consensus disorder prediction 514 528 - -
Aev01g3021 665 MobiDBLite consensus disorder prediction 560 576 - -
Aev01g3021 665 CDD RRM_SF 72 134 - -
Aev01g3021 665 Gene3D - 55 175 IPR012677 -
Aev01g3021 665 SUPERFAMILY CBS-domain pair 394 599 IPR046342 -
Aev01g3021 665 SMART rrm1_1 71 148 IPR000504 GO:0003723
Aev01g3021 665 MobiDBLite consensus disorder prediction 514 536 - -
Aev01g3021 665 SUPERFAMILY RNA-binding domain, RBD 63 135 IPR035979 GO:0003676
Aev01g3021 665 CDD CBS_pair_CorC_HlyC_assoc 404 509 IPR044751 -
Aev01g3021 665 MobiDBLite consensus disorder prediction 625 665 - -
Aev01g3021 665 MobiDBLite consensus disorder prediction 630 651 - -
Aev01g3021 665 Pfam Cyclin M transmembrane N-terminal domain 218 389 IPR002550 -
Aev01g3021 665 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 179 658 - -
Aev01g3021 665 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 179 658 IPR045095 GO:0010960
Aev01g3021 665 Gene3D - 390 526 IPR046342 -
Aev01g3021 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g3021 Aev-Chr1 31736824 31742768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g3021 9 133 Eukaryotic Initiation Factors Gene Family AT3G11400 26.984 2.85e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g3021 K16302 - gmx:100803705 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3021 01 31736824 31742768 Aev01g3021 01 31736824 31742768 ECH
Aev01g3021 01 31736824 31742768 Aev04g0243 04 1507885 1512261 PCT