Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2969 ATGGAGCGGTACGGCCGTGCCGGCGAGGGGTCGCAGTCGGATCCGCCGCCGGAGTGGAACGTCACTGGCGGCGACACGGGGCTCGAAGAGCCTATGTGGAAGCTTGGATTGGTTGGTGGTGGCGGTGGTGAATCGTACCCTCAGCGTCCTGATGAAGCTGATTGTATCTACTATCTCAAAACGGGTTTCTGTGGCTATGGCCCGAGGTGTCGGTTCAACCACCCACGTGACCGTGCCGCGGTTATTGGTGCTGCGAGGACTGGAGGAGAGTACCCGGAGCGAGTGGGCCAGCCTGTATGCCAGTATTATATGAGGACTGGGTCGTGCAAATTCGGTGCCTCCTGCAAGTACCACCATCCCAGGCAGGCAGCAGGTGCTGCTTCCCCTGCGTCATTTAACTATTATGGATATCCATTGCGAGTGGGCGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCACAGCCTGCTGGTGTCCAAATTCCAGCACCATCGCCAGTTCCCCCAGTTTCGCCTCTACCTGTACAAGTACCTTCACCATTGTATCCAACTGTACAGCCTCCGTCTGGTCCTTCATCACAGCAATATGGTGTGCTGGTTGCAAGGCCTCCTATGCTGCCTGGCTCAATAGTGCAGGGCCCCTATGGGCCTGTGGTAGTATCCCCTGCTATGGTCCCTTATTCAGGCTGGGGTCCTTATCAGGCTCCTGCAGCAAGCCCTGTACTTCCTTCTAGTGCTCCATCTAGTGTCGGTTCAACACAGCTTTATGGGATAACTCAGCTGCAATCGCTGCCAACTGCCTATTCTGGATCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGCAGTACTCAGAAGGAGCACCCATATCCAGAAAGGCCTGATCAGCCAGAATGTCAGTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATACCATCATCCACCAGACATGAATGCACCAAAAGCAAATGTGATCCTTAGTCATGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAGTTTGTAAGTTTGGTCATGCATGCAAATTCGATCATCCTATTGGATCACTCAGTTATAGTCCATCTGCTTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGCACACTTGCCCCATCATCTTCGTCATCCGAGTTGCGGCCTGACCTCTCCTCAGGATTGAGCAAGGAGGCTATTTCATCCAGAATGTCTACATCAATGAGCATGTCGACTGCATCGGTCGGCTTGGCCTTGTCAACTGTTGGGCCCATTTCTCAATCAAACACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCGGTGCTGCCACGAGTAGCACTGCCTCTCACACCTCAAGCTAA 1461 0.5229 MERYGRAGEGSQSDPPPEWNVTGGDTGLEEPMWKLGLVGGGGGESYPQRPDEADCIYYLKTGFCGYGPRCRFNHPRDRAAVIGAARTGGEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGAASPASFNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSSQQYGVLVARPPMLPGSIVQGPYGPVVVSPAMVPYSGWGPYQAPAASPVLPSSAPSSVGSTQLYGITQLQSLPTAYSGSYQPSGSSIGPSGSTQKEHPYPERPDQPECQYYMKTGECKFGPSCRYHHPPDMNAPKANVILSHVGLPLRPGAPPCTHYTQRGVCKFGHACKFDHPIGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPDLSSGLSKEAISSRMSTSMSMSTASVGLALSTVGPISQSNTQPSAQSSSSSATTGAATSSTASHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2969 486 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Aev01g2969 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Aev01g2969 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Aev01g2969 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Aev01g2969 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 333 IPR000571 GO:0046872
Aev01g2969 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Aev01g2969 486 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872
Aev01g2969 486 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Aev01g2969 486 SUPERFAMILY CCCH zinc finger 51 78 IPR036855 GO:0046872
Aev01g2969 486 Gene3D - 130 174 - -
Aev01g2969 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 472 - -
Aev01g2969 486 SUPERFAMILY CCCH zinc finger 309 334 IPR036855 GO:0046872
Aev01g2969 486 SMART c3hfinal6 306 333 IPR000571 GO:0046872
Aev01g2969 486 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Aev01g2969 486 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Aev01g2969 486 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Aev01g2969 486 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Aev01g2969 486 SUPERFAMILY CCCH zinc finger 356 382 IPR036855 GO:0046872
Aev01g2969 486 MobiDBLite consensus disorder prediction 1 28 - -
Aev01g2969 486 MobiDBLite consensus disorder prediction 453 486 - -
Aev01g2969 486 Gene3D - 295 381 - -
Aev01g2969 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 472 - -
Aev01g2969 486 MobiDBLite consensus disorder prediction 279 310 - -
Aev01g2969 486 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Aev01g2969 486 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Aev01g2969 486 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
Aev01g2969 486 MobiDBLite consensus disorder prediction 408 437 - -
Aev01g2969 486 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Aev01g2969 486 MobiDBLite consensus disorder prediction 279 297 - -
Aev01g2969 486 Gene3D - 46 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2969 Aev-Chr1 31451337 31454995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2969 1 432 C2H2 Transcription Factor Family AT5G18550 59.142 9.22e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev01g2969 zf-CCCH 8.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2969 - - gmx:100789405 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2969 01 31451337 31454995 Aev01g2969 01 31451337 31454995 ECH
Aev01g2969 01 31451337 31454995 Aev04g0334 04 2099006 2108603 PCT