Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2927 ATGGACAAGAATGGCAATGGCAAGGAAAACGAATACGACGCAAAAGGCTACGCCCTGAGCGGCAAGATTATGCTGACATCAATCGTCATTCTCTTCATCATCGTCATCATAATGCTCTCTATCTACGCCTACGCCCGCTGCTACCTCCACTGCACACGCCGCCGCACACAGAGCCGCTCCCACCTCCTCTTCTACGTGGACCCCTCCCTGATGGCAGCCACGCGCGGCCTCCATCACGCCATCATCGCCTCCCTCCCCGTCTTCGTGTATTCCTCCAAGACCCACCCGGACCCGATACACTGCCCCGTCTGCATCTCGGATTTCGATGAAGGGGAAACGGGTCGGGTCTTGCCCAAATGCAACCACACCTTCCACACTGAATGCATTGACATGTGGTTCCACTCACACTCCACATGCCCACTTTGCAGGGCACCCGTTGAGCTCGCGACCCGACCCGAATTGCTTGCAACTGTTTGCGAACCGGAAACCGGTTCGAGTTCCGGGCTGTGCGATCATGGAGAGGATGAGCTGAGCCGGACTGAACCGGTGGGTTCTTCTTCGTCAAATGGGTTGGTGCGGAAACCGTCGTCGATTGTGGGTGTGAGCGTTGAGGTGCCCGGAAGGAACGACGAATCAGGATGTGACTCGCCGTCGTCGTCGTTTCGGTCGCCGATGAGTCGCATGATGTCGTTGAAGAGGATTCTCAGTCGAGAGAGGAAAGCCAGCATTTCGTCGTCGTCGAGTTGCGCCGCTGGGTGCAGCTCCTCCTTCACGGCCGAGTTTGACTTGGAGCGAGGTGAACGAGTCGAGACTCAGTGA 819 0.5726 MDKNGNGKENEYDAKGYALSGKIMLTSIVILFIIVIIMLSIYAYARCYLHCTRRRTQSRSHLLFYVDPSLMAATRGLHHAIIASLPVFVYSSKTHPDPIHCPVCISDFDEGETGRVLPKCNHTFHTECIDMWFHSHSTCPLCRAPVELATRPELLATVCEPETGSSSGLCDHGEDELSRTEPVGSSSSNGLVRKPSSIVGVSVEVPGRNDESGCDSPSSSFRSPMSRMMSLKRILSRERKASISSSSSCAAGCSSSFTAEFDLERGERVETQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2927 272 CDD RING-H2_EL5_like 101 143 - -
Aev01g2927 272 MobiDBLite consensus disorder prediction 162 227 - -
Aev01g2927 272 SMART ring_2 101 142 IPR001841 -
Aev01g2927 272 MobiDBLite consensus disorder prediction 212 226 - -
Aev01g2927 272 Pfam Ring finger domain 100 143 IPR001841 -
Aev01g2927 272 MobiDBLite consensus disorder prediction 180 195 - -
Aev01g2927 272 SUPERFAMILY RING/U-box 81 149 - -
Aev01g2927 272 PANTHER RING-H2 FINGER PROTEIN ATL64 2 208 - -
Aev01g2927 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 208 - -
Aev01g2927 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 148 IPR013083 -
Aev01g2927 272 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Aev01g2927 272 SMART FANCL_C_2 97 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2927 Aev-Chr1 31239665 31240483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2927 2 266 Rapid Response to Elicitors AT3G16720 46.689 1.53e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2927 - - rcu:8278761 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2927 01 31239665 31240483 Aev01g2927 01 31239665 31240483 ECH
Aev01g2927 01 31239665 31240483 Aev04g1154 04 7331380 7332306 PCT