Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2800 ATGGAGGAAGATGACTGGGATATCACCGCTGAGGAACTCGATTCTCTTGAACGCGACGCTCTCCAGAAAATTGCTCAATTCCGCAGTTCTTCTTCTTCTTCTACTTCCTCTTCTGCTCCTTCTTCTACTTCTGCTTCTTCTTCAGCTCAACAATTCAATGCGCAGCAACAACACCATTCTGCAAAACCTTCTACCAACCGCTCTCAACCCTACCCATCAAACCCTGTTTCCGATTCTCGTCCTCAGAGGGTTGATACTTCATCTCAAGGAGGTAGAGCATTGAAACCAGGGACTAATAAAGATGACCATCCAAAAGAACCGCCAAAGCTCTCGGTCAAATTTTTTCTTCATTCCACTGGGAATGTTGCAGCAAAGTTTCAATATGATCAGGTAGTAGTTGCTGCTTTTCGAAAAGTCCCTAGAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCGCTATCTTCTTTATCAGAAGCAGAGAAGCTCCTTGGAGAAATATCTGGTTGCAATGTTCAGGTGGAGAACTTGGATTCATTAGTGCACCGGGCCATTACTGCTGCATCTGCTGTTCCAGATCTTCGAGATCGATACAACCAGATCCCTAGGTACATTGAATCAAGGCTTTTGCCATTTCAGCGAGAAGGTGTTAGATTTATTTTGCAACATGGAGGACGTATTCTTTTAGCAGATGAAATGGGACTAGGGAAAACCTTGCAGGCCATAGCAGTGGCTTCATGCATTCAAGACTCATGGCCTGTTCTCGTACTTGCACCATCTTCACTACGCTTGCAATGGGCTACTATGATCCAACAATGGCTCAATCTTCCTTCGTCAGATATACTTATTGTCTTGCCTCAAAGTGGTGGATCAAACAGAGGAGGTTTCAATATAGTATCCTCAAGTACCAAAAGTGGCATTCATCTGGATGGACTGTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCTTGGCATCAGACATTAAGGTTGTTATTGCAGATGAATCACACTATCTGAAAAATGCTCAGGCAAAGAGGACTACTGCTACTCTTCCAGTTATAAAGAAAGCTAAGTATGCTATATTGCTTAGTGGAACACCTGCTTTATCCCGGCCAATAGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGACGTGTATAAGAATGTTCATGAATATGGTAGCCGATATTGCAAGGGTGGAATTTTTGGAATTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATACGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTATTCCTAGATTTGGCTGACAAGGACATGAAACAAATAAATGCTTTATTCCGTGAGTTGGAGACGGTAAAAGCTAAAATTGAGGTAGCTAAATCGAAAGAGGAAGCTGAATCGCTTAAGTTTACACAAAAGCATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCTCACCATCAGTCAATGATAGATTCAATACATGAGTTTCTTCTCAAGAAAAAAGTGGGCTGCATCCGGATTGATGGAACTACACCTGCTGCATCAAGGCAACAACTGGTTACAGAGTTTCAGGAAAAGGATGCTATCAAGGCAGCAGTGTTATCGATTAAAGCTGGAGGAGTTGGATTAACTCTAACTGCTGCAAGTACAGTCATCTTTGCAGAGTTATCCTGGACTCCAGGTGACCTAATTCAGGCTGAAGATCGTGCTCATAGAATAGGCCAGGTGTCTTCAGTCAATATATACTACTTGCTGGCAAATGACACAGTTGATGACATCATTTGGGATGTCGTGCAAAGCAAGCTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGTGGTCTCAACTAATAAGCCAGACCATAGTCATGCAATGCAGAAAACTTCTAGCCAGAGTCCCTCAAAGCAGAAAACCCTTGACCAGTTTGTTAGAAGATGTGACAAAGCAGATGGGTCGGAAGATCATCAGCCCAGCCCCAAACGCCCCCGGCACTAA 2142 0.4244 MEEDDWDITAEELDSLERDALQKIAQFRSSSSSSTSSSAPSSTSASSSAQQFNAQQQHHSAKPSTNRSQPYPSNPVSDSRPQRVDTSSQGGRALKPGTNKDDHPKEPPKLSVKFFLHSTGNVAAKFQYDQVVVAAFRKVPRASWNAKERLWMFPLSSLSEAEKLLGEISGCNVQVENLDSLVHRAITAASAVPDLRDRYNQIPRYIESRLLPFQREGVRFILQHGGRILLADEMGLGKTLQAIAVASCIQDSWPVLVLAPSSLRLQWATMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSSSTKSGIHLDGLFNIISYDLVPKLQNMLLASDIKVVIADESHYLKNAQAKRTTATLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGSRYCKGGIFGIYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELETVKAKIEVAKSKEEAESLKFTQKHLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGTTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLVVSTNKPDHSHAMQKTSSQSPSKQKTLDQFVRRCDKADGSEDHQPSPKRPRH* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2800 713 MobiDBLite consensus disorder prediction 24 109 - -
Aev01g2800 713 MobiDBLite consensus disorder prediction 24 94 - -
Aev01g2800 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 433 IPR027417 -
Aev01g2800 713 Coils Coil 462 482 - -
Aev01g2800 713 SMART helicmild6 536 619 IPR001650 -
Aev01g2800 713 SMART ultradead3 206 399 IPR014001 -
Aev01g2800 713 MobiDBLite consensus disorder prediction 689 713 - -
Aev01g2800 713 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 697 - -
Aev01g2800 713 ProSiteProfiles HARP domain profile. 106 179 IPR010003 -
Aev01g2800 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 662 IPR027417 -
Aev01g2800 713 MobiDBLite consensus disorder prediction 668 688 - -
Aev01g2800 713 Gene3D - 183 439 IPR038718 -
Aev01g2800 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 391 IPR014001 -
Aev01g2800 713 Gene3D - 473 703 IPR027417 -
Aev01g2800 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 669 IPR001650 -
Aev01g2800 713 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 2 697 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aev01g2800 713 MobiDBLite consensus disorder prediction 668 713 - -
Aev01g2800 713 CDD DEXHc_HARP_SMARCAL1 210 433 - -
Aev01g2800 713 CDD SF2_C_SNF 506 630 - -
Aev01g2800 713 Pfam Helicase conserved C-terminal domain 519 619 IPR001650 -
Aev01g2800 713 Pfam SNF2-related domain 229 488 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2800 Aev-Chr1 30442748 30448753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2800 400 646 RAD5 or RAD16-like Gene Family AT1G61140 26.190 3.71e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev01g2800 SNF2_N 1.7e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2800 K14440 - gmx:100797654 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2800 01 30442748 30448753 Aev01g2800 01 30442748 30448753 ECH