Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev01g2781 | ATGGCAACCACAGAACCCCCACCTTTCCAAGAAGCAGCTCGATGTGTTGTCTGCAATTGCAGTTTCAACACCTTCAGGAGACGGCATCACTGTCGATCATGCGGGAGAACTTTGTGCAATGAACATTCATCAAATCAAATGGCTTTGCCTCAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACATTGCACCATCTGGGAAGGATGTAACACAGGCTTCTTCAGATGGAGTAGGCAGAGTAACAGATGAAATTTCTAAATTAGATATTGATGCAACTGCTACTTCAAAAGCCATGCCTACTGTAGGGAATACCATTGTATCAAGTGTTAAGGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAGGCCCCTGCTCCTTCCTCTAATGCACTCCCTCAGCAGACAAAATCCACCACTCCAGCTAGTACAGCTCAATCAAATCCTAAACCTAAGAAGGCAGATAATGTTTCGAAAAATAGAAGCTCTGGCTCATCTAGCAAATTTAGTTCTACGTTTAACCTTGGTCAGACAACCAATGGTGCATCAGACAGAAGCCAGACTGATTACGAAGCTAATGGAGAGGGAATAAGAGAAGCTATAAAAAATGGCGATGCTGCTGCTGTCAAGAAACTTCTTGATCAGGGTGTTGATGCAAATTACAAGGACAAGCAGGGACTATCTTTGCTGCATTTGGCTGCGGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCTGGGGCAAGCGTGCAGTACAAAAACGCACAAGGAGAAACACCTTTAGATTGCGCTCCAGCTACCTTGCAATATAAAATGCGAAAGAAGATGCAAGAAGGAAGCCATAGAGCTCATCTGAACTTCCCCCCTTTTCCATTTCTTCTTCTTCTTCTTCTCTCTCAAAATCTCCATTTCTTCCTTCCTTTCAAACAAATGGGGTTCTATGTGGAGGACTCTTCTGCATCTCTTACAATAGGCCAAGCTATATATGAAGCAGCTCTTATAATTGCAGTTCTGAGATGGGTCTTGTGCTTTGTTTTCAAGGTGATCAAAGATAGAAGAAGCACCCCATCTGATGAATCACCATCATCATCATCTTGTTCTTCTCTGTCATTGGTGTCTTCACAGATTATAAGGGACAGCACTCTTGTTCTGACAACCTTTGGTGAGATCTTAGAGAGGCTTCCAGAAACAGAGGAGACCTGTGCTGTGTGCTTGAACCAGATCAAGGTTGAAGATGAGGTTAGGGAATTGATGAACTGCTACCATGTCTTCCACAAGGAATGCATAGATAGATGGTTGGATCATGAAGAAGACAACCCAACTTGCCCATTATGCAGGGCACCTCTGTTAACTTCTCCTAATTGCTGCTTTTCATCATCAGATCATAGCTCTTGCTGTGTCCCTCCTCCTCAGCCTCAGCCTAGTTGGGCTGTTGAGAGACTTCTCTACCTCTTTGGGGATGATCTTCTGCCTTATTAG | 1497 | 0.4329 | MATTEPPPFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGIYSNVRVCADCFNIAPSGKDVTQASSDGVGRVTDEISKLDIDATATSKAMPTVGNTIVSSVKECKCGMPLCICEAPAPSSNALPQQTKSTTPASTAQSNPKPKKADNVSKNRSSGSSSKFSSTFNLGQTTNGASDRSQTDYEANGEGIREAIKNGDAAAVKKLLDQGVDANYKDKQGLSLLHLAAVFNQTDIVFILMDSGASVQYKNAQGETPLDCAPATLQYKMRKKMQEGSHRAHLNFPPFPFLLLLLLSQNLHFFLPFKQMGFYVEDSSASLTIGQAIYEAALIIAVLRWVLCFVFKVIKDRRSTPSDESPSSSSCSSLSLVSSQIIRDSTLVLTTFGEILERLPETEETCAVCLNQIKVEDEVRELMNCYHVFHKECIDRWLDHEEDNPTCPLCRAPLLTSPNCCFSSSDHSSCCVPPPQPQPSWAVERLLYLFGDDLLPY* | 499 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev01g2781 | 498 | Pfam | FYVE zinc finger | 10 | 66 | IPR000306 | GO:0046872 | |
| Aev01g2781 | 498 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 458 | IPR013083 | - | |
| Aev01g2781 | 498 | ProSiteProfiles | Ankyrin repeat profile. | 229 | 261 | IPR002110 | GO:0005515 | |
| Aev01g2781 | 498 | Gene3D | - | 178 | 277 | IPR036770 | - | |
| Aev01g2781 | 498 | SUPERFAMILY | Ankyrin repeat | 204 | 271 | IPR036770 | - | |
| Aev01g2781 | 498 | SMART | ring_2 | 407 | 451 | IPR001841 | - | |
| Aev01g2781 | 498 | ProSiteProfiles | Ankyrin repeat region circular profile. | 229 | 260 | - | - | |
| Aev01g2781 | 498 | SMART | fyve_4 | 1 | 70 | IPR000306 | GO:0046872 | |
| Aev01g2781 | 498 | MobiDBLite | consensus disorder prediction | 134 | 194 | - | - | |
| Aev01g2781 | 498 | Pfam | Ring finger domain | 406 | 452 | IPR001841 | - | |
| Aev01g2781 | 498 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 3 | 287 | - | - | |
| Aev01g2781 | 498 | ProSiteProfiles | Zinc finger RING-type profile. | 407 | 452 | IPR001841 | - | |
| Aev01g2781 | 498 | Pfam | Ankyrin repeats (3 copies) | 204 | 270 | IPR002110 | GO:0005515 | |
| Aev01g2781 | 498 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 69 | IPR013083 | - | |
| Aev01g2781 | 498 | MobiDBLite | consensus disorder prediction | 134 | 195 | - | - | |
| Aev01g2781 | 498 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 9 | 69 | IPR017455 | - | |
| Aev01g2781 | 498 | SUPERFAMILY | FYVE/PHD zinc finger | 9 | 77 | IPR011011 | - | |
| Aev01g2781 | 498 | CDD | FYVE_scVPS27p_like | 8 | 65 | - | - | |
| Aev01g2781 | 498 | SUPERFAMILY | RING/U-box | 401 | 458 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev01g2781 | Aev-Chr1 | 30347642 | 30353462 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev01g2781 | 317 | 495 | C3H Transcription Factor Family | AT5G20885 | 46.875 | 2.15e-41 | 144 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev01g2781 | - | - | gmx:100814367 | 445.662 |