Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2745 ATGCAGCAACAGAGGTTGAGGCAGCAGCAGCAGCAGCAGCATGCCATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACTCCACCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTCTATGTCGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTCCAAGAGCTTTTTGCAGGCGCTGGTGCCCTTGAAGGATGCAAGCTCATCAGGAAAGAGAAGTCATCCTATGGCTTTGTTGACTACTTTGATCGCAGTTCAGCTGCATTTGCTATTGTAACACTCAATGGGAGGCACATTTTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGCAGTCAGAGAGAGGATACATCAGGTCATTTTAATATTTTTGTTGGCGACCTTAGCCCTGAGGTTACAGATGCGACACTGTTTGCTTGCTTCTCTGTATATCCTAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAAACAGGCCGTTCCAGGGGATTTGGATTTGTGTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCAATTAATGATTTAACTGGAAAGTGGCTTGGAAGTCGACAGATACGCTGTAATTGGGCTACTAAAGGAGCTACTTCCAATGATGAAAAGCAGAGTTCAGATTCCAAAACTGTTGTGGAGTTAACTAATGGAACATCTGAAGAAGTGCAGGAAACAACCAACGAAGACGCACCAGAGAAGAATTCTCAGTATACCACCGTTTATGTGGGCAATCTTGCTCCAGAGGTTACTTCTGCTGATCTCCATCAACATTTCCATGCCCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATGGGTAACGCACGGATTTTGTTTGGAAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACACCTCCGGGAACCGCCTCTACTCCTCTTCCCCCACCTGCTTCCGCACATTTGCCAGGTGTTTCACTCGCTGGCCTCGCAGCATATGAACGCCAGATTGCTTTGAGCAAAATGAGTGGTGCGCATGCCCTTATGCATCAACAGAGTCAACATGCCTTGAAGCAGGCGGCAGCCATGGGAATGGGTGCTCCTGGTGGTGGCTATGATGCAGGATTCCAGGGTGTTGGGACTAATCAGCACCTCATGTACTATCAGTAA 1254 0.4761 MQQQRLRQQQQQQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSESLLQELFAGAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGATSNDEKQSSDSKTVVELTNGTSEEVQETTNEDAPEKNSQYTTVYVGNLAPEVTSADLHQHFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPASAHLPGVSLAGLAAYERQIALSKMSGAHALMHQQSQHALKQAAAMGMGAPGGGYDAGFQGVGTNQHLMYYQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2745 417 Gene3D - 1 133 IPR012677 -
Aev01g2745 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Aev01g2745 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Aev01g2745 417 CDD RRM3_TIA1_like 257 331 - -
Aev01g2745 417 CDD RRM1_TIA1_like 53 123 - -
Aev01g2745 417 SMART rrm1_1 137 210 IPR000504 GO:0003723
Aev01g2745 417 SMART rrm1_1 52 121 IPR000504 GO:0003723
Aev01g2745 417 SMART rrm1_1 258 327 IPR000504 GO:0003723
Aev01g2745 417 CDD RRM2_PUB1 137 211 - -
Aev01g2745 417 MobiDBLite consensus disorder prediction 214 252 - -
Aev01g2745 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Aev01g2745 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 325 IPR000504 GO:0003723
Aev01g2745 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Aev01g2745 417 Gene3D - 134 235 IPR012677 -
Aev01g2745 417 Gene3D - 236 335 IPR012677 -
Aev01g2745 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 125 IPR000504 GO:0003723
Aev01g2745 417 SUPERFAMILY RNA-binding domain, RBD 248 336 IPR035979 GO:0003676
Aev01g2745 417 SUPERFAMILY RNA-binding domain, RBD 40 129 IPR035979 GO:0003676
Aev01g2745 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 413 - -
Aev01g2745 417 SUPERFAMILY RNA-binding domain, RBD 129 218 IPR035979 GO:0003676
Aev01g2745 417 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 9 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2745 Aev-Chr1 30076396 30080545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2745 43 331 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 2.62e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2745 K13201 - gmx:100813736 710.679