Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2648 ATGACGACTCGAATAGCCCCTGGTGTCGGAGCTAACTTGCTCGGGCAGCACTCCGCCGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAACCTCGATCCCCAGGCTACTGAGGACTTGCTCTGGGAGCTTTTCGTTCAAGCTGGCCCTGTCGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACCAACATCAAGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATTAAGGTGCTTAATATGATAAAGCTTTATGGGAAACCAATACGTGTAAATAAGGCAACTCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTAGATGAGAAGCTGTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGAGACAGGCAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCTGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAAGGGGAAAGGCACGGTACTCCAGCAGAGAGAGTTTTGGCTGCAAGCAACCCGACTGCACAGAAGAGCAGGCCTCATACATTATTTGCCAGTGGGCCTCCGACGCTTCCCAATGTTGCTCAGGCTAATGGTACAGTTCCTGCTCCAGTGCCTCCTCGCCCCTTTGCTAATGGGGTTCCTCCGGCTGGTATTCCTGCCCTCCGTCCACCACCCCCTCAAGCTGCAGCATTCCAGCCTATGCCAGTAGCGCAACCAGGGTGGCATCAGCAGCAACCTGGTCTACCACCTGTTATGCCTCATCATCAAGTCCAGCAGTTTAGGCCGCCTCCCGCTGGTATGCCGATGCCACCACCTCCACAAGCCGTTTCAGCTCCTCCAAGGCCTCTTCCTCCGCCAACAGTAATGGCAAGCCAACCACCTCCTGTTTGGCGACCGCCACCACCTCCACCTCAGCAACAGGGTGGACGGCCTATGCTATATCCGCAGTCCTCAATGCCCCCACCTCCTCCCAATAATCATATGCCACCACCACCTTCAAATTGA 1125 0.4978 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQATEDLLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVAQANGTVPAPVPPRPFANGVPPAGIPALRPPPPQAAAFQPMPVAQPGWHQQQPGLPPVMPHHQVQQFRPPPAGMPMPPPPQAVSAPPRPLPPPTVMASQPPPVWRPPPPPPQQQGGRPMLYPQSSMPPPPPNNHMPPPPSN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2648 374 CDD RRM2_SF3B4 111 193 IPR034159 -
Aev01g2648 374 CDD RRM1_SF3B4 28 100 IPR034158 -
Aev01g2648 374 MobiDBLite consensus disorder prediction 263 374 - -
Aev01g2648 374 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 353 - -
Aev01g2648 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Aev01g2648 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Aev01g2648 374 PRINTS Proline rich extensin signature 335 360 - -
Aev01g2648 374 PRINTS Proline rich extensin signature 259 280 - -
Aev01g2648 374 PRINTS Proline rich extensin signature 243 255 - -
Aev01g2648 374 PRINTS Proline rich extensin signature 212 228 - -
Aev01g2648 374 PRINTS Proline rich extensin signature 309 326 - -
Aev01g2648 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Aev01g2648 374 MobiDBLite consensus disorder prediction 303 374 - -
Aev01g2648 374 SMART rrm1_1 26 99 IPR000504 GO:0003723
Aev01g2648 374 SMART rrm1_1 113 187 IPR000504 GO:0003723
Aev01g2648 374 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Aev01g2648 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Aev01g2648 374 Gene3D - 16 111 IPR012677 -
Aev01g2648 374 PANTHER TRANSFORMER-2-RELATED 1 353 - -
Aev01g2648 374 Gene3D - 112 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2648 Aev-Chr1 29491723 29495350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2648 18 195 Eukaryotic Initiation Factors Gene Family AT4G34110 29.032 9.39e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2648 K12831 - gmx:100791039 550.436