Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2439 ATGCCTGATGGGGAATCCTCTACCGCCTCTTCATCGCTGCCTCTAAGTCTCTCTGAAGTCAAGGATCATCGTGACTACGCCGTCAAGAAAGACCCCAAAATAATTGCCAGAAAGTATCAGTTGGATCTGTGCAAAATAGCATTGGAGGAAAATATAGTTGTATATTTGGGGACAGGTTGTGGTAAGACCCACATTGCTGTGCTGCTTATGCATGAAATGGGACATTTGATACGGAAGCCCCAGAAAAATGTGTGTGTCTTTCTTGCCCCTACTGTGGCTCTTGTTCATCAGCAAGCGAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGATTTACTGCGGGAGCTCCAAGCGCTTGAAACGTCATCATGATTGGGAGTTGGAGATTGGACAACATGAGGTTCTTGTTATGACCCCACAGATATTATTGCACAACTTATCTCATTGTTTCATCAAGATGGAGATGATTTCACTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATCCCTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATACCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCAGTTGTAGGAAAAGGGGCTTCTAGTGAAGGAAATCTACCAAAAAGCATCAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCAGTTGGAGACGCTGAATTGCAATCTTTTGTGACCACTCCTAAGATTTCTATATATCATTATAGCTCAACTGCAAGTGGGGCAATTAATTTGTACACGACTTACTTTGCCAGACTTAGCGAGATCAAACATCAGTGCATATCAACACTTGGTAAGAATGTTGAAGCTCACCAGAAACGGATGAACACGAGGAAACTTCTAAACAGGATGCATGAGAATGTGGTTTTCTGTCTGGAGAATCTTGGTCTTTGGGGAGCACTTCAAGCTAGTCGCGTTCTTTTGAGTGGTGATCATTCTGAGAGGCGTGAATTACTGGAGGCAGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTAACTCAGGCTGCTGAATTCTTTACTTCACAATGTGGGATAGGTGACAGCGCATCTGATTTGTCTTCCACGGAAATATTGAAAGAGCCCTTTTTCTCATCAAAGCTTTTGAGCCTCATTCAGATACTGTCCTCCTTTAGGTTGCAACAGAACAGGAAATGTATAATATTTGTTAATAGAATTGTGACTGCAAGATCCCTGTCATACATTCTTAGGCAACTGAAGCTTCTGACACAATGGAAAAGTGATTTTCTAGTTGGAGTCCATGCTGGACTGAAGAGCATGTCGCGAAAGACCATGAACATCATTGTTGAGAAGTTTCGTTCTGGCGAGTTGAATCTATTGGTTGCTACTAAAGTTGGTGAAGAAGGACTTGACATTCAGACTTGCTGCCTTGTCATACGGTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTAGTCGATAGTGGCAATAAGAAGGATCTAGATCTAATTGATGGTTTTGAGAAAGATGAATGCCGAATGAATATGGAAATTTCTTACCGGACATCCAATGAGACATACATCACCCCTGTGGAAAGGATCTTCAAAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTTGACCCCAAGCCAAGTTTTTTTTACTTTGATGATAAAGGGGGAATTGTTTGCCACATAATATTTCCTTCCAATGCTCCAATACACCTAATTGTCAGTTCACCTCAGTTGTCTATGGAAGATGCCAAAAAGGATGCTTGCCTGAAAGCAATCGAAGAACTGTATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCGAAGCAAGATGATGCAGAGCCAGAGGAGAAGGATTCAAAGCCTTCTGATTCAGATGGGTGTGAAGATGACAATCCAAGAGGAGAATTGCATCAAATGCTAGTTCCTTCTGCCTTTGAACAGTCTTGGGAAAATGAGGAGAAAAATGTCCATCTCAAATCTTACTATGTAAAATTTTGTCCTTATCCGGAGGATAGGGTCTACAAAAAGTTTGGTCTATTCATCATGACACATCTTCCAATGGAGGCTGAAAAACTTGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTGATGACAACATTTGTTCCGTTTGGAGTTGCAAAATTTGACAAAGATGAGATTAAGATGGCGGAAAATTTTCAAGAGATGTTCCTCAAAGTTATTCTGGATCGATTAGAATTTGTTTCTGAGTTTGTACCCCTGGGTAAGGGTGCTGAATCTCACACCACCAGATCAACTTTCTACCTTTTGCTTCCAGTTCTATTGCAAGAACATGAAAATGTCATGTCTGTAGATTGGAAGACAGTGAGGAGATGCCTTTGTTCACCAATTTTTAAGCATCCAGCAGATACTGGTCATAAAAGATTTTACCCTTCAGATTTGACCCTGCAACTAGCCAATGGTTCTAGCTGTGTAAGGGATATTGAAAATAGTTTAGTATATGCTCCACATAGAAAGCACTTTTATTTTATCACAAATGTTATTCATGGAAAGAATGGATACAGTCCCTGTAAAGATTCAGACACTTCAAGATATGTGGACGACTACATCGAAAAATTTTCCATTCATCTCAAACACCCTGAGCAACCACTTCTGCATGCAAAACCACTCTTCAATTTGCATAACTTGCTACACAACCGAAAGAATGAGGATACAGAACCACATGAGCTGGAAGAATTCTTCATTGATTTGCCCCCTGAGCTTTGTGAACTGAAAGTGGTAGGTTTTTCAAAGGATATGGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCAAATGCTATTTTCTTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCATACAATTCTAGAGGCCCTCACCACTGAAAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTAGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCAGTCGCACGCCATTTTTTTCTCATCCATGACAGCCTTCATGAAGGAGACCTAACTAGAAGGCGCTCCAATGTTGTAAATAATTCCAATTTGTATAAGTTGGCTATTAGACGCAATTTGCAGGTCTATATACGTGATCAGGCATTCGATCCCTCCCAGTTCTTTGCATTAGGCCGTCCTTGCCCAATAGTTTGTAACAAAGAAATGGAAGAAAGCATACACTTGTCAATAAATTCTGTTAAGGAGCAAGGAAGATCAACTGAAGTCCTGTGCAATAAAAATCACCACTGGTTACATAGGAAAACAGTTGCTGATGTGGTTGAAGCTCTGATCGGAGCATTCATTGTCGACAGTGGCTTTAAAGCCGCAATTGAATTTCTTAAATGGATCGGCATACAAGTCAATTTTGAAGCCTCACAAGTGATTAATGTTTGCACTGGAAGTGCTGGCTATATCCCTCTCTCTGATGAGGTAGACATTCCTTCCCTGGAAGATAGGCTAGGATATAATTTTGTTCATAAGGGTCTGCTTCTTCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGGGGAGGTTGTTACCAGCGGCTGGAGTTTCTTGGTGATGCTGTGTTGGATTATTTGATTACTTCATACCTATTCTCAGCTTATCCCAAGCTAAAGCCTGGTCAATTGACGGATTTGAGATCATTGTCCGTTAACAACAAGGCATTTGCCTGCGTTGCGGTAGAACACAGTTTTGATAAATTTCTTTTATATGATTCTAACAGCCTTTCCGAGGCAATAAGAAAGTATGTGGACTATATTGGAAGATCTGTTTCACGTAATGGTGTTATTGAAGAGCCAAAATGTCCAAAGGCCCTGGGTGACATTGTGGAATCTTGTGTTGGTGCTATTCTTCTGGATTCAGGATTCAATTTGATCAAAGTTTGGGAGATAATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCGAGTTTGCAGCTTAGTCCCATCAGGGATTTGCAAGAACTTTGTCAGTCTCATAATTTGGAGTTTCAGTTTGCGCCGACAAAACTGACTAAAGTGTTTTCAGTCGAAGTGAAAGTGACTGGGGACGGTGTAAATAAAATCGCTTCAGCCACCAGCCAAAACAAAAAGGAGGCTTTACGAATTGCTTCGCAGAGACTATTTTCAGACTTGAAGGCTCAGGGCTGGAAACCAAAGTCAAAATCTTTGGAAGATGTTCTAAAATCAACCTTCAAGGGGGAAGCAAAACTTATCGGCTATAATGAAATTCCCATCGATGTAACAGCTACCAATTCTGTGGATACCGTAGCAGTTAATGGAAACTTGAGCAGCAAGTATAACCCGATAATCCGCCCCATGCGTGAGGTGCTTGATATAAAACCTGTTGGCCAGCAACTTCAACCTTCTCTCAAGAGACGGCTAAGCGGAACTTCTGAAAGCCATGATGGTGACAGGGACTCATTGAGGACAGATTGTGCATTCAAAGGAACAGCAAGATCGCGATTGTATGAATTCTGTGCTGCTAGTTGCTGGAAACCTCCTTTATTTGAGTGCTGCAAAGAAGATGGACCAGACCACATGAAGAAGTTCACTTACAAGGTGACTTTGGAGATAGAAGAAGCCTCTGATACGATTTTTGAGTTTATTGGGGATCCTCAATCAAAGAAGAAAGATGCGGCGGAGTGTGCGGCTGAGGGCGCATTTTGGTACCTACAACAGGAAGGCTACCTGCCTAAACCTAACCCTAACTGA 4884 0.4122 MPDGESSTASSSLPLSLSEVKDHRDYAVKKDPKIIARKYQLDLCKIALEENIVVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNVCVFLAPTVALVHQQAKVIEDSTDFKVGIYCGSSKRLKRHHDWELEIGQHEVLVMTPQILLHNLSHCFIKMEMISLLIFDECHHAQVKSNHPYAEIMKVFYKNNTTKVPRIFGMTASPVVGKGASSEGNLPKSINSLEQMLDAKVYSVGDAELQSFVTTPKISIYHYSSTASGAINLYTTYFARLSEIKHQCISTLGKNVEAHQKRMNTRKLLNRMHENVVFCLENLGLWGALQASRVLLSGDHSERRELLEAEGNSSDDSLCDKYLTQAAEFFTSQCGIGDSASDLSSTEILKEPFFSSKLLSLIQILSSFRLQQNRKCIIFVNRIVTARSLSYILRQLKLLTQWKSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKDLDLIDGFEKDECRMNMEISYRTSNETYITPVERIFKVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFFYFDDKGGIVCHIIFPSNAPIHLIVSSPQLSMEDAKKDACLKAIEELYKLGALSDCLLPKQDDAEPEEKDSKPSDSDGCEDDNPRGELHQMLVPSAFEQSWENEEKNVHLKSYYVKFCPYPEDRVYKKFGLFIMTHLPMEAEKLELDLHLAHGRSVMTTFVPFGVAKFDKDEIKMAENFQEMFLKVILDRLEFVSEFVPLGKGAESHTTRSTFYLLLPVLLQEHENVMSVDWKTVRRCLCSPIFKHPADTGHKRFYPSDLTLQLANGSSCVRDIENSLVYAPHRKHFYFITNVIHGKNGYSPCKDSDTSRYVDDYIEKFSIHLKHPEQPLLHAKPLFNLHNLLHNRKNEDTEPHELEEFFIDLPPELCELKVVGFSKDMGSSISLLPSIMHRLGNLLVAIELKQMLFSSFPEAAEISAHTILEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLIHDSLHEGDLTRRRSNVVNNSNLYKLAIRRNLQVYIRDQAFDPSQFFALGRPCPIVCNKEMEESIHLSINSVKEQGRSTEVLCNKNHHWLHRKTVADVVEALIGAFIVDSGFKAAIEFLKWIGIQVNFEASQVINVCTGSAGYIPLSDEVDIPSLEDRLGYNFVHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVEHSFDKFLLYDSNSLSEAIRKYVDYIGRSVSRNGVIEEPKCPKALGDIVESCVGAILLDSGFNLIKVWEIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLEFQFAPTKLTKVFSVEVKVTGDGVNKIASATSQNKKEALRIASQRLFSDLKAQGWKPKSKSLEDVLKSTFKGEAKLIGYNEIPIDVTATNSVDTVAVNGNLSSKYNPIIRPMREVLDIKPVGQQLQPSLKRRLSGTSESHDGDRDSLRTDCAFKGTARSRLYEFCAASCWKPPLFECCKEDGPDHMKKFTYKVTLEIEEASDTIFEFIGDPQSKKKDAAECAAEGAFWYLQQEGYLPKPNPN* 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2439 1627 CDD DEXHc_dicer 34 233 - -
Aev01g2439 1627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 539 IPR001650 -
Aev01g2439 1627 CDD DSRM_DCL_plant 1548 1617 - -
Aev01g2439 1627 ProSitePatterns Ribonuclease III family signature. 1235 1243 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 SMART helicmild6 414 504 IPR001650 -
Aev01g2439 1627 SMART ultradead3 32 230 IPR014001 -
Aev01g2439 1627 Pfam Helicase conserved C-terminal domain 385 502 IPR001650 -
Aev01g2439 1627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 219 IPR014001 -
Aev01g2439 1627 Gene3D Ribonuclease III domain 1005 1170 IPR036389 GO:0004525|GO:0006396
Aev01g2439 1627 SMART riboneu5 1215 1367 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 SMART riboneu5 1010 1179 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 PANTHER DICER-RELATED 32 1619 - -
Aev01g2439 1627 MobiDBLite consensus disorder prediction 1519 1533 - -
Aev01g2439 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1541 1617 IPR014720 -
Aev01g2439 1627 Pfam PAZ domain 861 984 IPR003100 GO:0005515
Aev01g2439 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1371 1437 IPR014720 -
Aev01g2439 1627 ProSiteProfiles Ribonuclease III family domain profile. 977 1159 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 Pfam Dicer dimerisation domain 568 653 - -
Aev01g2439 1627 Gene3D - 1369 1445 - -
Aev01g2439 1627 ProSiteProfiles PAZ domain profile. 863 963 IPR003100 GO:0005515
Aev01g2439 1627 CDD RIBOc 1216 1366 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 Pfam Ribonuclease III domain 1028 1159 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 Pfam Ribonuclease III domain 1235 1344 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 Gene3D paz domain 857 961 - -
Aev01g2439 1627 SMART PAZ_2_a_3 848 989 IPR003100 GO:0005515
Aev01g2439 1627 CDD RIBOc 1012 1169 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 SUPERFAMILY RNase III domain-like 1200 1352 IPR036389 GO:0004525|GO:0006396
Aev01g2439 1627 Gene3D - 33 264 IPR027417 -
Aev01g2439 1627 Pfam DEAD/DEAH box helicase 39 199 IPR011545 GO:0003676|GO:0005524
Aev01g2439 1627 Gene3D Dicer dimerisation domain 564 660 IPR038248 -
Aev01g2439 1627 SMART DRBM_3 1542 1616 IPR014720 -
Aev01g2439 1627 SMART DRBM_3 1372 1436 IPR014720 -
Aev01g2439 1627 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 568 658 IPR005034 GO:0016891
Aev01g2439 1627 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1542 1616 - -
Aev01g2439 1627 SUPERFAMILY dsRNA-binding domain-like 1542 1624 - -
Aev01g2439 1627 Gene3D - 377 538 IPR027417 -
Aev01g2439 1627 ProSiteProfiles Ribonuclease III family domain profile. 1200 1344 IPR000999 GO:0004525|GO:0006396
Aev01g2439 1627 Gene3D Ribonuclease III domain 1198 1368 IPR036389 GO:0004525|GO:0006396
Aev01g2439 1627 SUPERFAMILY RNase III domain-like 1010 1173 IPR036389 GO:0004525|GO:0006396
Aev01g2439 1627 PANTHER DICER-LIKE PROTEIN 4 32 1619 - -
Aev01g2439 1627 MobiDBLite consensus disorder prediction 1511 1533 - -
Aev01g2439 1627 MobiDBLite consensus disorder prediction 653 676 - -
Aev01g2439 1627 Gene3D - 1548 1617 - -
Aev01g2439 1627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 517 IPR027417 -
Aev01g2439 1627 SUPERFAMILY dsRNA-binding domain-like 1326 1435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2439 Aev-Chr1 28060028 28070755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2439 384 501 Eukaryotic Initiation Factors Gene Family AT3G13920 29.661 1.28e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2439 K11592 - gmx:100818702 2505.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2439 01 28060028 28070755 Aev01g2439 01 28060028 28070755 ECH