Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2388 ATGTCCACGAACCACATAGTTAATGGTGGTGCCGACCCTGAATCCCTCAGCCAACCTTTACTCTCTTCCCACAGATCCCTCGTCAACTCAACCTCCCAGGTTGCCATCGTCGGCTCCAATGTCTCCCCAATTGAGAGCCTTGACTATGAGATCTTCGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGGCTCAGATACTCCAGTACATGTGCATGAAGTGGCTCTTGTGCTTCCTCCTTGGCTTGATCGTTAGCCTTATCGGTTTCTGCAATAATCTCGCTGTTGAGAATCTCGCTGGCATGAAGTTTGTCATCACATCCAACATGATGCTGGAGAGAAAGTTTCTGGGGGCTTTTGCAGTCTTTTTTGCTTCAAATTTGAGCCTCACGCTTTTTGCTTCTATAATCACGGCTCTGATAGCACCTGCTGCCACCGGTTCCGGTATACCGGAGGTGAAGGCATACTTGAATGGCGTGAATGCACCTGGAATATTTACTGTACGGACTCTGTTTGTTAAGATCATTGGAAGCATTACAGCAGTGTCGTCATCCCTTCTCATTGGGAAGGCTGGGCCTATGGTCCATACAGGTGCATGTGTGGCATCATTGTTGGGGCAGGGCGGGTCAAAGAGGTATGGACTAACGTGGAAATGGTTGCGCTTTTTTAAGAATGACAGAGACCGACGAGACCTGGTAATGTGTGGATCAGCAGCTGGAATGGCTGCTGCCTTTCGTGCCCCTGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGACATCTTGGTGGAGAAGTGCGCTTCTGTGGAGAGCTTTCTTTACGGCAGCAATAGTTGCAATTATGCTTCGTGCTATGATTGATGTATGTTTAAGTGGTAAATGTGGGTTATTTGGAAAAGGAGGTCTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCACTTGGAGGATGTTCCTGCTGTGTTTATTCTAGGTGTTATAGGAGGGATACTTGGAAGCTTATATAACTTTGTGCTGAATAAAGTTCTTCGTGTATACAATTTTATCAACGAGAAGGGTACCATTTGCAAAATTGTGCTTGCTTGTGTAATCTCCATTTTTACCTCCTTTCTTCTTTTCGGATTGCCATGGCTCGCATCTTGCCGACCTTGTCCACCTGATGCAACTGAGCCTTGTCCGACAATAGGCCGATCTGGTAACTATAAGAAATTCCAATGCCCTCCTGATCAATACAATGATCTGGCCAGCCTCATTTTTAACACAAATGACGATGCTATCAGAAATCTATTTAGCAGGAACACTGATTCTGCGTTTCAGCATTCATCAATGTTCATCTTTTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTGACAGGCGCATCTTATGGACGCTTTGTTGGAATGTTGGTCGGCAAGAACTCCAATCTTAACCATGGCCTTTATGCTGTACTTGGCGCTGCTTCCTTTCTTGGTGGATCTATGAGGACAACCGTTTCTCTGTGTGTAATTATTCTAGAGCTGACCAATAACTTGTTATTGCTACCCCTAATCATGATGGTCCTTTTGGTATCTAAGACTGTAGCGGATGCTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGTTTTCCTTATCTAGAAACTCATGCTGAGCCATATATGAGACAGCTAACAGTAGGTGACGTAGTCACAGGACCGCTTCAGATGTTTAATGGCATTGAGAAGGTTCGTAACATAGTGTTCGTTCTGAAAACTACGACGCACAATGGGTTCCCTGTTATTGATGAACCTCCTCATTCTGAAGCACCAGTTTTATTCGGTATAATCCTTCGTGACCATCTTGTCACGTTGTTAAATAATAAAGCCTTTTTATCAGGACCAAGGGCAATTGGTGTTGATGTGTTTAAGCAGTTTTCATCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAAGTGAAAAGATAGAAGATATACAATTAACAGAGGAAGAGATGGACATGTACATTGATCTACATCCATTTTCTAATGCTTCGCCTTATACTGTTGTGGAGACAATGTCACTGGCAAAGGCCCTTATACTTTTTCGACAAGTCGGTTTAAGGCACCTGCTAGTGATTCCCAAGATCCCTGGTAGATCACCTGTAGTAGGTATACTGACGCGGCACGATTTCATGCCGGAACATATACTGGGTTTGCATCCTTTTCTGGTTAGAAGCAGGTGGAAGAGATTAAGATTCCAGATCCCATGTCTGGGAAAACTCTTTTAG 2325 0.4366 MSTNHIVNGGADPESLSQPLLSSHRSLVNSTSQVAIVGSNVSPIESLDYEIFENEFFKQDWRSRGKAQILQYMCMKWLLCFLLGLIVSLIGFCNNLAVENLAGMKFVITSNMMLERKFLGAFAVFFASNLSLTLFASIITALIAPAATGSGIPEVKAYLNGVNAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLVMCGSAAGMAAAFRAPVGGVLFALEEMTSWWRSALLWRAFFTAAIVAIMLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHLEDVPAVFILGVIGGILGSLYNFVLNKVLRVYNFINEKGTICKIVLACVISIFTSFLLFGLPWLASCRPCPPDATEPCPTIGRSGNYKKFQCPPDQYNDLASLIFNTNDDAIRNLFSRNTDSAFQHSSMFIFFITCFFLSIFSYGVVAPAGLFVPVIVTGASYGRFVGMLVGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQMFNGIEKVRNIVFVLKTTTHNGFPVIDEPPHSEAPVLFGIILRDHLVTLLNNKAFLSGPRAIGVDVFKQFSSDDFAKKGSSKSEKIEDIQLTEEEMDMYIDLHPFSNASPYTVVETMSLAKALILFRQVGLRHLLVIPKIPGRSPVVGILTRHDFMPEHILGLHPFLVRSRWKRLRFQIPCLGKLF* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2388 774 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aev01g2388 774 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aev01g2388 774 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aev01g2388 774 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aev01g2388 774 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aev01g2388 774 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 746 - -
Aev01g2388 774 PANTHER CHLORIDE CHANNEL PROTEIN 13 766 - -
Aev01g2388 774 SUPERFAMILY CBS-domain pair 569 744 IPR046342 -
Aev01g2388 774 SUPERFAMILY Clc chloride channel 54 568 IPR014743 -
Aev01g2388 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 13 766 - -
Aev01g2388 774 Pfam CBS domain 697 743 IPR000644 -
Aev01g2388 774 Gene3D - 568 743 IPR046342 -
Aev01g2388 774 Gene3D Clc chloride channel 68 567 - -
Aev01g2388 774 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aev01g2388 774 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2388 Aev-Chr1 27742982 27746961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2388 14 768 Ion Channels AT5G33280 76.159 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2388 K05016 - gmx:100817901 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2388 01 27742982 27746961 Aev01g2388 01 27742982 27746961 ECH