Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2342 ATGGACAGGAAGAGAAGGGTGTGGCTAGGGACATTCGAAACAGCAGAGGAAGCTGCTCGTGCCTATGATCAAGCTGCAATATTAATGAGTGGTCGAAATGCAAAGACTAATTTCCCAATCACGCAAACTCCAGACGGTGATCCGAACATCTTCACTACTACTACTCATCAGGACGCTCCTACTTCCACCACCACATCTTCGAAGGATCTAGAAGAAATCCTTCACGCCAAGCTTCGAAAATGTGGCAAACTTCCCTCCCCTTCCATGACATGCTTGAGGCTCGACACCGAGAACTCTCACATTGGGGTTTGGCAGAAGCGTGCTGGCCACCGTTCTGATTCCAATTGGGTCATGAGGGTTCATCTCGGAAACAATAATATTAATAACACCACCACTTGTTCTCTTCCCTCTTCTTCTTTTCCAGATCACCAGTCTCCGATTTCGATCGTTCCTGCCGGTGATCAGGAATTGATGATGAGGGCCGAGATTGACGAGGAAGAGAGGATCGCATTGCAAATGATAGAAGAGCTCCTCAACCGGAATTGTCCTAGCCCATCTAATTTTAACACTATTGAAGAAAGGGATGATAATGGTGCCAGCTTTCTTCTTTAA 612 0.4657 MDRKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPDGDPNIFTTTTHQDAPTSTTTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGHRSDSNWVMRVHLGNNNINNTTTCSLPSSSFPDHQSPISIVPAGDQELMMRAEIDEEERIALQMIEELLNRNCPSPSNFNTIEERDDNGASFLL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2342 203 Pfam AP2 domain 3 30 IPR001471 GO:0003700|GO:0006355
Aev01g2342 203 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 187 - -
Aev01g2342 203 ProSiteProfiles AP2/ERF domain profile. 1 39 IPR001471 GO:0003700|GO:0006355
Aev01g2342 203 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 4 187 - -
Aev01g2342 203 SUPERFAMILY DNA-binding domain 3 40 IPR016177 GO:0003677
Aev01g2342 203 Gene3D AP2/ERF domain 1 41 IPR036955 GO:0003700|GO:0006355
Aev01g2342 203 CDD AP2 4 41 IPR001471 GO:0003700|GO:0006355
Aev01g2342 203 SMART rav1_2 1 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2342 Aev-Chr1 27345077 27345688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2342 4 181 AP2-EREBP Transcription Factor Family AT1G15360 56.180 3.13e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev01g2342 AP2 5.4e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2342 - - adu:107472039 261.151