LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g2323	ATGGTGTGGACTCAGAACCTTCCTCGTCCCCCTCGTTGCAGTTACAACGGTGATGCCTCCTTCCCCTTCTCCCCCAACGACAACGGTTACAATCGTTCTTCTGCTCCAAGGCCACGTGGCAGGGGTGGTTACGTAACTGGCCGTTCCGGTGCTCGCGGACGTGGCCGCTGGAATTCTCGCCCGGAAAATGACTTTTACTCTAACCGGAACGATCGGTCCCCGTTCGATGTTGCCGATGGCTTCAACCAGCTTGATTTGAAAGACGAAGGTGAGAACGGTGGCGGAGGAATCAATTTCGACGCGTATGAATCGGTTCCGGTGGAGGTCAGCGGTGAGAACGTGCCTCCGCCGGTCAATACTTTCGCGGAGACGGATCTTGACGAAGGTCTTAAGGTAAACATCGAGAGGTGCAAGTACGTGAAGCCTACTCCGATTCAGCGTCACGCGATTCCTATTGTTTCTGCGGGTCGTGACTTGATGGCGTGCGCACAAACAGGGTCGGGTAAAACGGCGGCGTTTTGTTTTCCGATCATTTCTGGGATTCTGAATGGTCGTAATGGGTCTTCTTCTGTGGGTCGTCGTGGTGGCGTTTTTGTTTCGTACCCAACGGCGCTTATTCTTTCTCCTACTAGGGAGTTGTCTTGTCAGATTCATGATGAAGCCAAGAAGTTTGCTTATCAAACTGGAGTGAAGGTTGTTGTTGCTTATGGTGGCGCTCCTATTTCTCAACAGCTCCGTAATTTAGAGAAAGGTGTTGACATCCTTGTTGCAACTCCTGGGCGTTTGGTGGATATCATTGAGAGAGAAAGGGTTTCACTGACAAAGATAAAGTATCTTGCTTTGGATGAAGCTGACCGTATGTTGGACATGGGTTTTGAGCACCAGATACGGAAAATTGTTCAGCAGATGCACATGCCTTCTCCTGGTGCAAGACAGACAATGCTTTTCAGTGCTACATTCCCTGATGATATACAGAAGCTTGCGTCTGATTTTTTATCAAATTACATATTCCTGTCTGTTGGAAGGGTTGGCTCTAGCACTGAACTGATTGTACAGAAAGTTGTACAAGTTGAAGATATGGAAAAAAGAGACCATCTAAAGGATCTTCTCCGTGGTCAAAGGGCAAATGGTGCCAATGGGAAGCCAGCTCTGGTTCTTGTATTTGTTGAGACAAAGAGGGGAGCGGATACTTTAGAAAACTGGTTGTCGAGAAATGGGCTTCCTGCAATTGCAATACATGGTGACAAAGTTCAAATGGAGAGGGAACGAGCTTTAAGATCTTTCAAAAGTGGTATTACTCCTATTTTGGTGGCAACTGATGTTGCTTCCCGAGGTTTGGATATTCCGCATGTTGCCCATGTTATCAACTTTGACTTGCCAAGAGGCATAGATGACTACGTTCATAGAATTGGCAGAACAGGTCGTGCTGGCAAGTCTGGTTTAGCCACTGCTTTCTTCAGCCACAAGAATATTCCTATTGCCAAGGCCCTTGTTGGACTCTTGCAAGAAGCAAAACAAGAAGTTCCGTCTTGGCTGACCCAATATGCTGATGGTTCATCCTATAGTGGTGGTGGTGGTGGCCATCGATCTCAGCGGTATGGCAGTGGAAGATATGGCGGCCGTGACTTCAGGAATTTCTCTGAACCTGAAATGGAGAATTACAACCACTCAAGTACTTATGGCGGCAATGCAGAATATAATGTTGATTTCAATGGTCATGCTGGTTCTATAGCTTATGACATCACAGATACAGTTCCTGCTGCTAGTTACCATGATACTGATGCTAATACTGATATGTTTGGAGGTGAAATGGTTGTTGAAGATGGGCCAAGTGGTTACCAATCTATTGTTGCCAGTGGGTGGGAATAG	1869	0.4708	MVWTQNLPRPPRCSYNGDASFPFSPNDNGYNRSSAPRPRGRGGYVTGRSGARGRGRWNSRPENDFYSNRNDRSPFDVADGFNQLDLKDEGENGGGGINFDAYESVPVEVSGENVPPPVNTFAETDLDEGLKVNIERCKYVKPTPIQRHAIPIVSAGRDLMACAQTGSGKTAAFCFPIISGILNGRNGSSSVGRRGGVFVSYPTALILSPTRELSCQIHDEAKKFAYQTGVKVVVAYGGAPISQQLRNLEKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVQQMHMPSPGARQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVVQVEDMEKRDHLKDLLRGQRANGANGKPALVLVFVETKRGADTLENWLSRNGLPAIAIHGDKVQMERERALRSFKSGITPILVATDVASRGLDIPHVAHVINFDLPRGIDDYVHRIGRTGRAGKSGLATAFFSHKNIPIAKALVGLLQEAKQEVPSWLTQYADGSSYSGGGGGHRSQRYGSGRYGGRDFRNFSEPEMENYNHSSTYGGNAEYNVDFNGHAGSIAYDITDTVPAASYHDTDANTDMFGGEMVVEDGPSGYQSIVASGWE*	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g2323	622	MobiDBLite	consensus disorder prediction	1	72	-	-
	Aev01g2323	622	CDD	DEADc_DDX3_DDX4	120	344	IPR044763	GO:0003724\|GO:0005524
	Aev01g2323	622	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	362	516	IPR001650	-
	Aev01g2323	622	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	119	147	IPR014014	GO:0003724
	Aev01g2323	622	Gene3D	-	82	339	IPR027417	-
	Aev01g2323	622	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	49	556	-	-
	Aev01g2323	622	SMART	helicmild6	396	477	IPR001650	-
	Aev01g2323	622	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	203	494	IPR027417	-
	Aev01g2323	622	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1	49	556	-	-
	Aev01g2323	622	Gene3D	-	340	520	IPR027417	-
	Aev01g2323	622	MobiDBLite	consensus disorder prediction	19	33	-	-
	Aev01g2323	622	SMART	ultradead3	138	353	IPR014001	-
	Aev01g2323	622	MobiDBLite	consensus disorder prediction	55	69	-	-
	Aev01g2323	622	Pfam	Helicase conserved C-terminal domain	362	477	IPR001650	-
	Aev01g2323	622	CDD	SF2_C_DEAD	350	486	-	-
	Aev01g2323	622	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	150	338	IPR014001	-
	Aev01g2323	622	Pfam	DEAD/DEAH box helicase	143	327	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g2323	Aev-Chr1	27251380	27254586	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g2323	117	509	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.487	1.24e-58	200

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g2323	K11594		-	gmx:100791226	771.541