Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2310 ATGAATTTCCCTGATAATCTGCCAATCATTGAGATGTCACCTCCAAGATTTGCAACAACCGATGCCATTGACGTGAGGCTTCAATTCCCAATGAAAAATGAGTCATTCGACTCACATTCACATTTGGATCAAGCCCATTTGGTCAAGAGGGCAAGAACCTCTGAGAACGACAACAATAGCCCCAGGATGATGATGGTGAACCCACCAAACCCTGCAATGAACAAAGGAACCAGCCACATTTTCTTCAAGACAAGAATGTGTGTGAAGTTCAAGCAAGGAGCATGTAGGAACGGCGAGAACTGCAACTTTGCACATGGTGTTGAGGACATGAGGCATCCACCCCCTAATTGGGAGGAGCTTGTGGGGCGTCGCAGCACCACCGATGAAAGGTCTTCTGGGAATTGGGATGAGGATCACAGGATTATCCAAAAGATGAAGATTTGCAAGAAGTTCTACAATGGGGAGGACTGCCCTTATGGTGATAGGTGCAGTTTTCTTCATGAGGACCCTGGGAAGTTCAGGGATGATTCTAGTGCTTTGAGGTTCAGGGAGAGCTCAGCAATAAGCATTGGAACTAATGGGTCCCCACCAATCATATATGGGGATGGCTCTAAATTGAATGACTCTGAAGGTGGTAATAGGGGTTTGAACAATGGTGGATTGAATGGTTCTAGGGGGATTGTGAAGTCTACCTTTTGGAAGACTAAGCTGTGTATCAAGTGGGAGACAACAGGTCACTGTCCCTTTGGAGTGGAATGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCCTATGGACGCATCGAAGCAGAAGCTGTAGGAGCCATTTCAACTTCAACCAAGGCTACCATCCCAACATTGCCAAATGTTGCATCATCAGTTCATCTCAATGATGCAAATTCTATCAACACAATAAGTATACCGCAGACAAATGAAGAGAAGCAGGTTAAGAAGTCCTTGCTGAGGTGGAAGGGACTGAATAAGATCAACCGGATTTATGGCGACTGGATCGATGATGACTTCCCTCTTTCCCCAAACTTGCCAGGTGGAGTGGAGTCCTGA 1065 0.461 MNFPDNLPIIEMSPPRFATTDAIDVRLQFPMKNESFDSHSHLDQAHLVKRARTSENDNNSPRMMMVNPPNPAMNKGTSHIFFKTRMCVKFKQGACRNGENCNFAHGVEDMRHPPPNWEELVGRRSTTDERSSGNWDEDHRIIQKMKICKKFYNGEDCPYGDRCSFLHEDPGKFRDDSSALRFRESSAISIGTNGSPPIIYGDGSKLNDSEGGNRGLNNGGLNGSRGIVKSTFWKTKLCIKWETTGHCPFGVECHFAHGQAELQVPYGRIEAEAVGAISTSTKATIPTLPNVASSVHLNDANSINTISIPQTNEEKQVKKSLLRWKGLNKINRIYGDWIDDDFPLSPNLPGGVES* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2310 354 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Aev01g2310 354 SUPERFAMILY CCCH zinc finger 229 264 IPR036855 GO:0046872
Aev01g2310 354 SUPERFAMILY CCCH zinc finger 79 112 IPR036855 GO:0046872
Aev01g2310 354 SUPERFAMILY CCCH zinc finger 141 169 IPR036855 GO:0046872
Aev01g2310 354 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 343 IPR045877 GO:0003729
Aev01g2310 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 343 - -
Aev01g2310 354 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Aev01g2310 354 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Aev01g2310 354 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Aev01g2310 354 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Aev01g2310 354 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Aev01g2310 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 259 IPR000571 GO:0046872
Aev01g2310 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Aev01g2310 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Aev01g2310 354 Gene3D - 74 112 - -
Aev01g2310 354 Gene3D - 227 264 - -
Aev01g2310 354 Gene3D - 142 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2310 Aev-Chr1 27190128 27191948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2310 234 263 C3H Transcription Factor Family AT1G68200 60.000 2.51e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev01g2310 zf-CCCH 1.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2310 - - aprc:113846184 454.136