Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2278 ATGGTCGAAAGAAGAAGGCAAGTACCGAAGAAGAAGAAGAAGATGACGATGGATGACGAGAGCTCCATATATGTCGGGGGTTTACCTTACGACGCCACCGAACAAACTATCCGCTCCGTCTTTAATTTGTATGGCGCCATACTTGATGTCAAGATTATCAATGACCATCGCACTAGGGGCAAATGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAGTTGATGCAATCGATGACATGAATGGCAGAACCATTGATGGGCGCATTGTTAAAGTTAATGGGGTCAGAACTCGTGGTGGGAGATCGAATTTTGGCAGAGAGCGTTATCATAATAGTGGTGAGAGGAATGGGGACTGGGATCGTGGCAGAGATCGAGACCGAGACCGAGGGTATGAATATGATAGGGATGGGCATAGGAATAGGAATGGTGATTATGCGCGGGAACGAGATAGGTCCCAAGACCCTGATCAGGACAGGCATAGAAGGTTTGAGCATATGCATGATCATGACCAAACAAGAGAACCTTCGATAGATAGAGATTGGAGTCGAGAGGATGATCGGATTGAAAATGAACAAGACAATGGGAGGGTGCAGAGTGAAGATGTGGATAGAGACCATAGCTTGAATTTGAATACAGATAGGAGGATTGAGAGGACCAGTGATCCTGATAGAAGCTCTGACAAGGATAGAAACGAACAGCCGAGGAGAAACTATGATTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGATTCACATGATAATTATGATGATCAGGTAGAAGATGAATTAGAGCAGTCAACTCATCGACTTGATCAACTGAAAAAGGAGGTTTCTCAGATGGAAGCGAAATTGGATGAGAAAAAAATTCTTGTTAAGGATTTAGATAAGAAGTCTAGGAAACTGGAGGAAGCACTGGTCAATGCAAAGAAACACTCTTCATATCGGCTTATGCAGTTGACCAATTTGCAGAAATGTTTTCTGCAAGTGAAAGATTGCACGGAAAGGCTCAAAGCCAGTGAAAAAGAACTTCAGGCTCTAGTTGATGCAGCAACGCTAGTGAATGATGCAGATGATGTTGGCTTAAAGGATGGACAACTCACAAATGGATACTAG 1125 0.4284 MVERRRQVPKKKKKMTMDDESSIYVGGLPYDATEQTIRSVFNLYGAILDVKIINDHRTRGKCYCFVTFTNPRSAVDAIDDMNGRTIDGRIVKVNGVRTRGGRSNFGRERYHNSGERNGDWDRGRDRDRDRGYEYDRDGHRNRNGDYARERDRSQDPDQDRHRRFEHMHDHDQTREPSIDRDWSREDDRIENEQDNGRVQSEDVDRDHSLNLNTDRRIERTSDPDRSSDKDRNEQPRRNYDLNVTNQHSMDLSSDSHDNYDDQVEDELEQSTHRLDQLKKEVSQMEAKLDEKKILVKDLDKKSRKLEEALVNAKKHSSYRLMQLTNLQKCFLQVKDCTERLKASEKELQALVDAATLVNDADDVGLKDGQLTNGY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2278 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
Aev01g2278 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Aev01g2278 374 MobiDBLite consensus disorder prediction 238 252 - -
Aev01g2278 374 Coils Coil 260 315 - -
Aev01g2278 374 SMART rrm1_1 22 94 IPR000504 GO:0003723
Aev01g2278 374 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 373 - -
Aev01g2278 374 MobiDBLite consensus disorder prediction 98 269 - -
Aev01g2278 374 Coils Coil 333 353 - -
Aev01g2278 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 15 373 - -
Aev01g2278 374 Gene3D - 2 114 IPR012677 -
Aev01g2278 374 CDD RRM_SF 23 94 - -
Aev01g2278 374 SUPERFAMILY RNA-binding domain, RBD 13 127 IPR035979 GO:0003676
Aev01g2278 374 MobiDBLite consensus disorder prediction 102 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2278 Aev-Chr1 26967649 26970171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2278 21 93 Eukaryotic Initiation Factors Gene Family AT2G36660 31.507 3.50e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2278 - - vun:114179118 497.278