Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2273 ATGTCTAGCATTAATTGGGAAGCTGATAAAATGTTAGATGTGTATATCTACGATTATCTCGTGAAGAAACAGTTGCATGCTTCTGCACGGGCATTTCAGGCTGAACGAAACGTCACCGATCCTGTTGCTATAGACGCACCGAATGGTTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCCAGGACAAATCAGAAGCACTCAGAAGAAGCAGCATCTTATGCTATGAGCCAACAAAATAAGGCTCGAGAAAGGCAGAAGCAACTGGAGCAAGAACTTCAGAATCCAAACCAGAATCAACAGATGCAAATGCAGCAGCTTTTAGTGCAGCAAAGGCATGCTCAGCAGCAGCAATGTAGGGGTGGAGCTCCACATGTTAGTGGTAGTGCAAGCTGTCCTATTAGCAATGATCATTTGATGAGGCAGAATCGTGCAACTTCTAGTGCTATGACCGCAAAAATGTATGAAGACAGGTTCAAGCTTCCACTCCAGAGGGATGCTTTGGATGCTGCTGCTATCAAGCACAAGGCGAGTGGTGATGTTGGCCAGCTTCTAGACCCAAATCATGCCTCATTGTTGAAAGCAGTAGCAGCAACAACTGGTGGACAGGCTACAGGGCAAACATTACTCAGTGCACCTAGCATTCTGCAGGGAAATCTTCAACGAGTTCAAGATCAAAACCCACAACTTCCAGGGCCGATGCAAGACATACGGAGTGAGATGAATCCATTGATTAGATCTCAAGCTACTGCTTCAGAAGGATCCTTTGTTGGTATTCATGGTACAAATCAAGATGGTAACAATTTGACTTTGAAAGGATGGCCTTTAGTAGCAGGACTGGACCAGCTTCGCTCAGACCTTACTCAGCAGAATAATTTGATGTACTCTCCGCATTCTGTCAATCAACTTTCACTACACCAGCAACTTATACTTCAGGCGCAACAAAATTTAGTTTCTCCTTCTGTCAGTGATCTTGAGAGCAGAAGAATCCGAGTGCTTCTTAATAATCAAAATATGGGTCTTGGGAAAGATGGACGATCAAATTCTGTAGGTGATTTAATTCCAAATATTTCACTTGCTCAAGTTGGTTCTCCTATGTTGCCTCATTCAGACTCGGATATTCTCCTTAAGCAACAAGTTCAGAAGAGCGGTCAGGGGCTTCAACGATATTTACAGCATTCTCTTTCAAGCCAGCAGTCTCAGAGTCTCCAGCAGCAAGAAAAAATTGGTTCTGGCAGCAATACAGTAGATGGAAGTGTGTCCAGTACCTTACGAGTAAATGACCAGGTTTCCAAAAGTCAAATTGGGCTAAAACGAAAGCAAGCATCATCTTCAGGTCCTGCCAACAGCTCTGGAACTGCAAACACCACCACAGGACCATCTACCAGTTCACCTTCATCGCCATCTGCACAAACAGGAGATGTGCCAACTGTGCAGCAGATTGTTCCTTCCTCTAAGTTGTTGGGCTCACTTACATCAACACAGAATCAATTGGCTGACATGGATCATCTTATGGGTGATGGATCTTTGGGTGAAAATGTGGAGTCATTCTTGTCTCCTGATGATGCAGTCCCTAGAGATAGAGTTGGCAAAGAATTCTCTTTCAAGGAGACCAAGCATATTATGGCAAGTACACATAAAGTTGAGTGTTGTCACTTCTCTTCAGATGGAAAACTGCTTGTTACTGGTGGCCACGATAAAAAGGCTTCTTTGTGGTGCACTGAATCGTTTAACTTGAAATCTACACTAGAAGAGCACACACAATGGATAACTGATGTTCGCTTTAGTCCGCGAACATTGCTTGTTGCTACATCCTCAGCTGACAAAACTGTTAAGGTTTGGGATGCTGATAATCAGCCTCGTTATTCTCTTAGAACATTCACAGGACATGCTACAACTGTGATGTCATTGGACTTCCACCCTAGTAAAGACGACCTTATTTTCTCGTGTGACGGTAGCGAGATAAGATACTGGAGTATTAAGAATGGTAGTTGTGCTGGGGTTTTCAAGGCTGGTGTAACTCAGATGAGATTTCAACCTCCTTTGGGGAGGCTTCTTGCTGCTGCGGTAGATAATCTCGTATCCATTATTGACGTAGAAACACTGGGTTGCACCCTTAAATTAACGGGCCACAATGACCTCGTCCGTGCCGTGTGCTGGAATTCCTCTGGAAAATATCTGGCATCTCTTAGTGATGATCTGGTTAGAATTTGGACAGTTGGATCAAGCAGCAAAGGGGAATGCATTCATGAGCTGAATGCATCATCTGGGAACAAATTCAACACCTGTGCCTTCCACCCTGTCTATCCTTTGCTTATCATTGGCTGCAATGAGACTATGGAGCTGTGGGACTTTGGTGAGAACAAGACAATGACTCTGCGGGCACATGAGAAGCTTGTGTCTTCCTTGGCAGTATCAAATGTTAATGGCTTGGTGGCATCAGCAAGTCATGACAAGCATTTCAAGATTTGGAAGTGA 2487 0.4403 MSSINWEADKMLDVYIYDYLVKKQLHASARAFQAERNVTDPVAIDAPNGFLFEWWSVFWDIYIARTNQKHSEEAASYAMSQQNKARERQKQLEQELQNPNQNQQMQMQQLLVQQRHAQQQQCRGGAPHVSGSASCPISNDHLMRQNRATSSAMTAKMYEDRFKLPLQRDALDAAAIKHKASGDVGQLLDPNHASLLKAVAATTGGQATGQTLLSAPSILQGNLQRVQDQNPQLPGPMQDIRSEMNPLIRSQATASEGSFVGIHGTNQDGNNLTLKGWPLVAGLDQLRSDLTQQNNLMYSPHSVNQLSLHQQLILQAQQNLVSPSVSDLESRRIRVLLNNQNMGLGKDGRSNSVGDLIPNISLAQVGSPMLPHSDSDILLKQQVQKSGQGLQRYLQHSLSSQQSQSLQQQEKIGSGSNTVDGSVSSTLRVNDQVSKSQIGLKRKQASSSGPANSSGTANTTTGPSTSSPSSPSAQTGDVPTVQQIVPSSKLLGSLTSTQNQLADMDHLMGDGSLGENVESFLSPDDAVPRDRVGKEFSFKETKHIMASTHKVECCHFSSDGKLLVTGGHDKKASLWCTESFNLKSTLEEHTQWITDVRFSPRTLLVATSSADKTVKVWDADNQPRYSLRTFTGHATTVMSLDFHPSKDDLIFSCDGSEIRYWSIKNGSCAGVFKAGVTQMRFQPPLGRLLAAAVDNLVSIIDVETLGCTLKLTGHNDLVRAVCWNSSGKYLASLSDDLVRIWTVGSSSKGECIHELNASSGNKFNTCAFHPVYPLLIIGCNETMELWDFGENKTMTLRAHEKLVSSLAVSNVNGLVASASHDKHFKIWK* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2273 828 Pfam LisH 10 35 IPR006594 GO:0005515
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Aev01g2273 828 SMART WD40_4 789 828 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 623 662 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 579 618 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 665 701 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 537 576 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 748 787 IPR001680 GO:0005515
Aev01g2273 828 SMART WD40_4 704 742 IPR001680 GO:0005515
Aev01g2273 828 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 667 - -
Aev01g2273 828 MobiDBLite consensus disorder prediction 390 478 - -
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 711 743 IPR001680 GO:0005515
Aev01g2273 828 SMART Lish 8 40 IPR006594 GO:0005515
Aev01g2273 828 MobiDBLite consensus disorder prediction 74 104 - -
Aev01g2273 828 PANTHER LISH-SSDP-WD40 3 828 - -
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 575 IPR001680 GO:0005515
Aev01g2273 828 Pfam WD domain, G-beta repeat 582 618 IPR001680 GO:0005515
Aev01g2273 828 Pfam WD domain, G-beta repeat 547 575 IPR001680 GO:0005515
Aev01g2273 828 Pfam WD domain, G-beta repeat 707 741 IPR001680 GO:0005515
Aev01g2273 828 Pfam WD domain, G-beta repeat 627 661 IPR001680 GO:0005515
Aev01g2273 828 Pfam WD domain, G-beta repeat 791 828 IPR001680 GO:0005515
Aev01g2273 828 SUPERFAMILY WD40 repeat-like 536 828 IPR036322 GO:0005515
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 671 IPR001680 GO:0005515
Aev01g2273 828 Gene3D - 525 675 IPR015943 GO:0005515
Aev01g2273 828 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 828 IPR044716 GO:0003714
Aev01g2273 828 CDD WD40 540 828 - -
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 796 828 - -
Aev01g2273 828 Coils Coil 82 102 - -
Aev01g2273 828 Gene3D - 676 828 IPR015943 GO:0005515
Aev01g2273 828 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Aev01g2273 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 796 828 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2273 Aev-Chr1 26914997 26921349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2273 625 827 Miscellaneous Gene Families AT5G08390 24.762 2.61e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aev01g2273 WD40 0.0025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2273 - - gmx:100801265 1062.75