Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2259 ATGTCATCATCAAGTGGAATGATCATGAGTTGGAGCTATGAGGAAGAGAAAGCATTTGAGAATGCAATAGCCATGCATTGGATTGATGAAGAGTCAAAAGAGCAATGGGAGAAGATTGCTTCAGAAGTTCCAAGCAAAAGCATGGAAGAGTTGAAGCAACATTATAAGGTCCTTGTTGAGGATGTTAGTGCAATAGAGGCTGGTCATATACCATTTCCAAATTATGCTTCAGAGGAAACTACATCTTCAAACAAGGATTTCCATGGTTCTTCCAAGTCCACAAATTCAGATAAGAGATCGAATTGTAATTATGGAAGTGGGTTTTCTGGCTTAGGACATGACTCCAACACCACACAGAGTGGTAAAGGAAGTATGTCAAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCAAGGACTCCAACTCAAGTTGCAAGCCATGCACAGAAGTACTTCATTAGGTTGAACTCAATGAATAGGGATAGGAGGAGGTCAAGTATCCATGACATTACAAGTGTGAACAATGGAGATGTGGCCAGTAATCAGGCACCAATTACAGGACAGCATAGCACAATACCCTCAACAACAATGGCTATGGGAGTGCAATCAGTGAAGCATAGGGGTCAACCCCATCATCATCATATGCCTGCTGCTGGTATAGGCATGTATGGTGCACCAGTTGGCCATCCTGTGGCTGCTCCTCATGGCCATATGGCTTCCGCAGTTGGAACTCCGGTGATGCTTCCTCCCGGACCGCACCCGCATCATCCCCATCCGCATCCTCATCCTCATCCACATCCTCCTTATGTTGTACCTCTTGCTTACCCAATGGCACCTCCAACAATGCACCAATAA 894 0.4418 MSSSSGMIMSWSYEEEKAFENAIAMHWIDEESKEQWEKIASEVPSKSMEELKQHYKVLVEDVSAIEAGHIPFPNYASEETTSSNKDFHGSSKSTNSDKRSNCNYGSGFSGLGHDSNTTQSGKGSMSRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSTIPSTTMAMGVQSVKHRGQPHHHHMPAAGIGMYGAPVGHPVAAPHGHMASAVGTPVMLPPGPHPHHPHPHPHPHPHPPYVVPLAYPMAPPTMHQ* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2259 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 167 IPR006447 GO:0003677
Aev01g2259 297 Gene3D - 126 171 - -
Aev01g2259 297 SMART sant 121 167 IPR001005 -
Aev01g2259 297 SMART sant 7 61 IPR001005 -
Aev01g2259 297 MobiDBLite consensus disorder prediction 75 100 - -
Aev01g2259 297 Gene3D - 2 72 - -
Aev01g2259 297 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Aev01g2259 297 SUPERFAMILY Homeodomain-like 126 170 IPR009057 -
Aev01g2259 297 MobiDBLite consensus disorder prediction 185 205 - -
Aev01g2259 297 CDD SANT 127 165 IPR001005 -
Aev01g2259 297 ProSiteProfiles SANT domain profile. 6 63 IPR017884 -
Aev01g2259 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 169 IPR017930 -
Aev01g2259 297 MobiDBLite consensus disorder prediction 74 100 - -
Aev01g2259 297 PANTHER TRANSCRIPTION FACTOR KUA1 9 296 - -
Aev01g2259 297 CDD SANT 14 59 IPR001005 -
Aev01g2259 297 PANTHER TRANSCRIPTION FACTOR MYBS1 9 296 - -
Aev01g2259 297 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Aev01g2259 297 ProSiteProfiles Myb-like domain profile. 10 59 IPR001005 -
Aev01g2259 297 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2259 Aev-Chr1 26776237 26777453 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aev01g2259 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2259 - - vun:114176836 447.203