LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g2204	ATGGGTCGGGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATAAACAGGCAAGTGACGTTCTCGAAGAGAAGGTCGGGGCTGCTGAAGAAAGCACACGAGATCTCTGTGCTTTGCGATGCTGAAGTTGCTCTCATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTTGAACGGTACGAGAGGTATTCGTATGCGGAGAGGCAACTCGTTGCAAATGACCAGCAGGCACCAAATGAGAACTGGGTTCTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACAGAGAAATCAAAGGAATTTCATGGGGGAAGATCTAGAAAACATGAGTCTGAAAGAGCTTCAGAATTTGGAACACCAGCTTGATTCGGCTCTCAAGCACATTAGATCACGCAAGAACCAACTCATGTATGAGTCTATTTCAGAGCTTCAGAAAAAGGATAAATCACTCCAAGAACAAAACAACTTGCTCGCCAAGAAGATAAAGGAAAAGGAGAAGGCTTTGGCCCAACAGGAGCAAGATAATGGGCTGCAAAGTGGCGTGGATATGACCTCTCTCCTTGTTTCTCAACCATTGGAGTCCTTGAATATTGGAGGCACCCCACAAGCGGCAGTAATAAGTGAAATTGGATTAGTAGGAGATAATGAAGTTGAAGGTGAAGGTGTAGCAGGAACTCCAACACAAGCTACTCCAGGAGCTAACAACAACAACAATCTTCTTCCCCCTTGGATGATTCGTCCTATCAATGATTAA	789	0.4575	MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVANDQQAPNENWVLEHAKLKARVEVLQRNQRNFMGEDLENMSLKELQNLEHQLDSALKHIRSRKNQLMYESISELQKKDKSLQEQNNLLAKKIKEKEKALAQQEQDNGLQSGVDMTSLLVSQPLESLNIGGTPQAAVISEIGLVGDNEVEGEGVAGTPTQATPGANNNNNLLPPWMIRPIND*	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g2204	262	Coils	Coil	89	109	-	-
	Aev01g2204	262	Pfam	K-box region	84	173	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev01g2204	262	Coils	Coil	152	186	-	-
	Aev01g2204	262	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	SUPERFAMILY	SRF-like	2	87	IPR036879	GO:0003677\|GO:0046983
	Aev01g2204	262	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	231	-	-
	Aev01g2204	262	Coils	Coil	126	146	-	-
	Aev01g2204	262	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Aev01g2204	262	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	231	-	-
	Aev01g2204	262	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Aev01g2204	262	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Aev01g2204	262	ProSiteProfiles	K-box domain profile.	89	179	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g2204	Aev-Chr1	26369099	26377146	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g2204	1	214	MADS-box Gene Family	AT1G26310	61.674	3.54e-92	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aev01g2204		K-box	1.3e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g2204	K09264		K09260	gmx:100784742	334.339

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev06g3635	06	36992270	36997091	Aev01g2204	01	26369099	26377146	ECH
	Aev01g2204	01	26369099	26377146	Aev01g2204	01	26369099	26377146	ECH