Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2203 ATGGGAAGGGGTAAGGTTGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAGAGGAGAAATGGATTGCTGAAGAAGGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATTTTCTCTAACCGGGGCAAGCTCTATGAGTTCAGCAGCACCTCCTGCATGATGAAAACGCTGGAGAAGTACCACCAGTATAGTTACAGTGCATTGGAGACCACCCGTCCACCCAATGATATGCAGAACAGCTACCAGGAATATGTGAGACTAAAAGCCAATGTAGAAGTCCTGCAACGTTCACAAAGGAACCTGCTAGGGGAAGATCTTGCTCAAATGAACACATCAGAGCTGGAGCAGCTTGAGAATCAACTGGAGGCTGCATTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCAGAATCGGGAATTTGCTCTTGTTGAAACCAATAATGTCTTAAGGAGCAAGCTAAAACAGTTGGAACAAGTTCCAGTTAGAGTGGGTTATGAAGATGCTAGTGTGGGTCCTAACATCCACTACAACCACCGTTTCCCTCCTCAATCTGAACCAGCTTTTTTCCAACCTGTCGGAGGAGGAGTTAACCCCACTTTACAAATTGGGTACAACCAGACGGGTGATGATGATGATGTGAACGTTGTTGGAGCTTCATCCTTGAATAATATGCAAGGATTCGTCTCTGCCTGGATGCTTTGA 756 0.455 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHQYSYSALETTRPPNDMQNSYQEYVRLKANVEVLQRSQRNLLGEDLAQMNTSELEQLENQLEAALKNIRSTKTQFMLDQLADLQNREFALVETNNVLRSKLKQLEQVPVRVGYEDASVGPNIHYNHRFPPQSEPAFFQPVGGGVNPTLQIGYNQTGDDDDVNVVGASSLNNMQGFVSAWML* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2203 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 235 - -
Aev01g2203 251 Coils Coil 117 144 - -
Aev01g2203 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 235 - -
Aev01g2203 251 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Aev01g2203 251 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aev01g2203 251 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Aev01g2203 251 Coils Coil 87 107 - -
Aev01g2203 251 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev01g2203 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev01g2203 251 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2203 Aev-Chr1 26355361 26360483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2203 1 251 MADS-box Gene Family AT5G15800 52.239 1.52e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev01g2203 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2203 K09264 - gmx:100797819 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3636 06 37006046 37010283 Aev01g2203 01 26355361 26360483 ECH
Aev01g2203 01 26355361 26360483 Aev01g2203 01 26355361 26360483 ECH