Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2201 ATGGAATCTTGGGGCTATGTTCCTGCTGAGGAAAAGGGGTATGTCACCAACAACGACACACTCTCCCCTCCTTGTAGCAGTAGTACCCTTGGAAGAACCAAAAGTTCCTTCTTGGGTTGGGAACTGAACACCCCATGTACTTTTTCAAACGACATGTTGGGTCATCAAACAATTGAGAACCATCAAGGTTTTGATGAATTGGGTATTCCTGAATTGTTGGGGAGACAATTATTGCCTCATGATAATATCACTAGTACTAATACAACCACTGTTGTGCCTTCCCCAAATGCTTTTTTTGGAAGAGGCTACTCAAATTCCAAGCTTTCAAACTCTGTGGTGGACTCTAATGGCCGTGATTCCTTCATTGATTTGAAGCTGGGGAGGTTTGATGATCATGGAGATGGTGCTTTGGATAAGGCATTATTTTCCAAAGCAGCACCTATTTTGTCTTCTTCTGAGTCATCAACAGCTCCTAAGAGGGTGAGAGCTTCAGCTTTGAATTCACAGACTGCATACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAAGTTTGTGAAGTTCACTCCAAAACAGCCATAGTTATAGTGAATGGAATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGCAAGCGCAGCTGTCGTAAACGCCTTGCTGGACATAATGAGCGTCGTAGAAAACCACAAGCAGGTATTCACTCTGGAAAGGCCGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGGAACATGCTAACATCAGCATCTTTTATCTGCTCGGAGATGCTCCCTAGTGGTGTCATACCTTCTGAGAAATATGGAATGAGTGGCTTATGGAAACCTTCCAAAGCAGAGCATGGGAATGGTTTTAGGATTCTTTCTTCTATGCCCGTGTCCAATGTACATCCTCAATCAAGATCACCTTTCCCTTTGTACAACGAAGTTGAAAAACAGTTTCCCTTTCTTCATGAAAATGGTGCTTCAACCAATACAGGGAGCATCTTCTGTGAAAGCAATAGCCAATACAAGAATGTCCTTGGGACCCAAAATTCCGGGCCACGGTCACTATTCCAGGACACTTCCTTAGGAAGCGAAGACTTCAACGTCTTTGATACGGCATCAACTGTTCATGGATTTTCGGGAATTTCAGACACTCGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCCGGAATTCCCTTCACTCACCCCTTGCTTATTCCAAGCAGCCATAGCCATCCTGCAACTGGAACCCAGCTTAGTCCTATATTGATATCTGACAATAATGATATTGTAAACTTTGAAATGGCAGATGGGATTTTCCAAGGTTCAGATTTTGCGAATGCGAAGGATCGCCTTTCCTGTGAAGATGTTGCAACAATTGACTTGCTGCAGCTTTCATCGCAGCTTCAGCGAGTTGAGCATCAGAGGCAGTCCTTGCAGGCGAAGCAAGAAAATGATTCTTCCTGCAGTCTCCGGATTACTTAA 1572 0.4421 MESWGYVPAEEKGYVTNNDTLSPPCSSSTLGRTKSSFLGWELNTPCTFSNDMLGHQTIENHQGFDELGIPELLGRQLLPHDNITSTNTTTVVPSPNAFFGRGYSNSKLSNSVVDSNGRDSFIDLKLGRFDDHGDGALDKALFSKAAPILSSSESSTAPKRVRASALNSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIHSGKAGRLLQPCGDSRFQGNMLTSASFICSEMLPSGVIPSEKYGMSGLWKPSKAEHGNGFRILSSMPVSNVHPQSRSPFPLYNEVEKQFPFLHENGASTNTGSIFCESNSQYKNVLGTQNSGPRSLFQDTSLGSEDFNVFDTASTVHGFSGISDTRCALSLLSSQSQNSSSQSSGIPFTHPLLIPSSHSHPATGTQLSPILISDNNDIVNFEMADGIFQGSDFANAKDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQAKQENDSSCSLRIT* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2201 523 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 86 441 IPR044817 GO:0003677
Aev01g2201 523 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 442 523 IPR044817 GO:0003677
Aev01g2201 523 MobiDBLite consensus disorder prediction 420 448 - -
Aev01g2201 523 Gene3D - 163 234 IPR036893 GO:0003677|GO:0005634
Aev01g2201 523 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Aev01g2201 523 SUPERFAMILY SBT domain 171 251 IPR036893 GO:0003677|GO:0005634
Aev01g2201 523 Pfam SBP domain 173 246 IPR004333 GO:0003677
Aev01g2201 523 PANTHER 1 PROTEIN, PUTATIVE-RELATED 86 441 - -
Aev01g2201 523 PANTHER 1 PROTEIN, PUTATIVE-RELATED 442 523 - -
Aev01g2201 523 Coils Coil 491 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2201 Aev-Chr1 26336914 26339891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2201 34 289 SBP-box Gene Family AT1G69170 43.411 3.25e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aev01g2201 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2201 - - gmx:100817547 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2201 01 26336914 26339891 Aev08g1676 08 13220075 13223682 ECH
Aev01g2201 01 26336914 26339891 Aev01g2201 01 26336914 26339891 ECH