Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2177 ATGGTGGCGATGGAGGAGACGGAGAGTGAAGGGTCGGTGGCGGTGTTGAGGATAGAGACGAGGATGACGACGAGGAACATGCAGATTGAGACTGGGGCCACGATTCTCACAATTTCTTCGCCGAGGGTGTCGAGAAGGGTCGGGGTTGAGGTTGAAGACGACGAAGGTGTTTGGGGTTCTGCCATTGCAGAGAGAGAGAGAGATATGCGAATCTGTCACAGTGATGGATCGAAGAAGAAACAGAGTTCAAAATATCTGTGTGCTAGGGTTTTAGCAATTCTCACTCCATTGCTCAAGGTTACAGCAATGGCGTTCTTTGGTAGACTTGGGAATATACTGAGAAATGCAGCAGCAAGTAAGCAGATTAGTTCGGAATTACGTTCATCCCCATCATTTTTCCAGGCTATACGGTGCATGACATCTGGTCCAAGCTCAAAACTGTTTATTGGAGGTGTTTCGTACTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATCATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACTTACAGTTCAGTTGAGGAGGCATCAAGTGCGATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGGTTAGGGTAAATTATGCTACCGACAGGACCCGTGGCTATGGCGGTGGTGGTGGCAGTTTTGGTGGTGGCTATGGCGGTGGTGGTGCTGGTTATGGAGGTGGTTATGGTAACTCTCCATATGGTGGTGGTGGTGGTAGTTATGGTGGTAATGCTGGTGAAGGTTATGGCGGAGGTGGCTATGGATCTGGTAGCAATTATGGGGTCAGTGGGGGATATGGCAATAACTATGCTGCTCCTGCTGGTTATGGAACTGGCAATGCTGGTGGCAATGACATGAATTATGGGAATGATGGTAGCGTTGCAGGAGGAAACACTTACTCTGGTGGAAGTACTGGAGGCTATGATGGTAACAGTGGGAATTTCGGTGTTGCTGGTGGTGGTGGAGGAAGTGATAGCTTTGGCACCGCCGCTGGTTTTGATGCTGCTGCAGGTGTTGGTAGTCACGAATCCTCTGCTGGTTTTGGTGGCGGCAGCAGCTTTGCTGATGGAAGTGAGGGATTGGATTACGGTAGTGGTGGCCAAGTGGATACCAAAGAAAGCACCGATGTAGACAGGGATGACTTTGGTGACACTGATAATGTCGATGACACTGATAATTTCGCCAAAAAGGCTTGA 1260 0.4865 MVAMEETESEGSVAVLRIETRMTTRNMQIETGATILTISSPRVSRRVGVEVEDDEGVWGSAIAERERDMRICHSDGSKKKQSSKYLCARVLAILTPLLKVTAMAFFGRLGNILRNAAASKQISSELRSSPSFFQAIRCMTSGPSSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYSSVEEASSAIQALDGQDLHGRRVRVNYATDRTRGYGGGGGSFGGGYGGGGAGYGGGYGNSPYGGGGGSYGGNAGEGYGGGGYGSGSNYGVSGGYGNNYAAPAGYGTGNAGGNDMNYGNDGSVAGGNTYSGGSTGGYDGNSGNFGVAGGGGGSDSFGTAAGFDAAAGVGSHESSAGFGGGSSFADGSEGLDYGSGGQVDTKESTDVDRDDFGDTDNVDDTDNFAKKA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2177 419 CDD RRM_HP0827_like 146 221 - -
Aev01g2177 419 PRINTS Eggshell protein signature 225 240 - -
Aev01g2177 419 PRINTS Eggshell protein signature 141 157 - -
Aev01g2177 419 PRINTS Eggshell protein signature 274 292 - -
Aev01g2177 419 PRINTS Eggshell protein signature 250 260 - -
Aev01g2177 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Aev01g2177 419 SMART rrm1_1 146 219 IPR000504 GO:0003723
Aev01g2177 419 Gene3D - 115 242 IPR012677 -
Aev01g2177 419 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 103 417 - -
Aev01g2177 419 MobiDBLite consensus disorder prediction 360 419 - -
Aev01g2177 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Aev01g2177 419 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 103 417 - -
Aev01g2177 419 SUPERFAMILY RNA-binding domain, RBD 142 252 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2177 Aev-Chr1 26049835 26053612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2177 118 239 Eukaryotic Initiation Factors Gene Family AT1G71770 34.586 6.53e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2177 K12741 - gmx:100799124 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2177 01 26049835 26053612 Aev01g2177 01 26049835 26053612 ECH