Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2160 ATGGAAGAAGAAGATCTTCAAGAATTCATCATCAACAAAAACACCAACATCACAAAGCAGCATGTTTGCAAGTTCTGCAGCAAGAGCTTCCCCTGTGGCAGATCATTGGGGGGTCACATGAGGTCTCATGTAATAGCAGCATCAGCATCTGATTCTGCTGACAATAACAACAACAACAATGAAAAAGAAAAGCCTCCTCCATTATCATCATCATCATCTCAAGAACACAACAACAACAGCAATACTGGGTATGGTTTGAGGGAGAATCCCAAGAAAACTTGGAGGATCTCTGATAACTCAACAGTTAATGAAGAAGAGGATACTCTGTTTTCGATCCATGACAACAAGCTCTGCAAAGATTGCGGCAAAGGCTTCCCTTCTTGGAAGGCCTTGTTTGGTCACATGAAACGACACTCCTCAGAGAAATTGGGTCAAGATTCTTGCATGGTGAAGCTTGTGATGGATTCTCAGTCTGATAATGAAGCAACTGCTCCAAGCAGAAGGACAAGGTCAAAGAGAAGAACAAGAAGGTACATGGTTGCTTCTACTACTACTACTACTACCACTACTACTACTACTACTACTTCTTCACTCTCTGAGGTTGAGCAAGAACAAGAAGAGGTTGCTATGAGCTTGATGATGCTAAGTAGAGATGTTGGTAATTGGAGAGGAATTCAGAACTCTCATAATAATAATAATGAATTTGGTCATCACTGCTTCGGGATGATTCGATCTTGTTCTTCTGTGAGGACTAATCTTGTTTCAAGAATTGATAGCAAGATGAAGCATAATACTACCCTCAATGATGAATCTTTGGTTGGAGATTCTGTTTCCAAAGGGAAAAGTAGTAATAATTCAGAGTTTTTGGTTACTAACAAAACTGGATTTGGATTTGGATTCATGAAGAGTGAAGGTGCATTATTGGATGATTCTGAAGCAGAAATTGGGAAGAGCAGAGTCAATGGAACAGAACAACCTGGTTTATCAATCAAGGCAAAGGTTTTGGATTCCGAAGAAGAATTGAAGTCAGATTCAGATTTCATCAATAATAAGAAGAACAGTAGTGTGAAAAGGGCTTCAGAAGGTGAATTCATTATAAGCAAGAACTGTTCTAAGAGAGGGAAATTTGAGTGTACTACTTGCAACAGGATCTTCCATTCCTACCAAGCTCTTGGAGGACACAGAGCTAGCCACAAGAAGATCAAAGGGTGTTTTGCTTCAACTTCAAGGATTGATCATCAGAGCAGTGATGAAAACAGCTTTGAAACTGAAAAAGAGACTCAACTCTCACCTGAAACCACCAAGAAACAAATCATGAAGAACAATAAGAACAATTTTGTTGAGAGTGAGAATTTTGTTGAGGATGAAGCTGTTGTTACTACTACACCTAGTAAAAGCAAAGTGCATGAGTGTCCAATTTGCTTTAAGGTTTTTGCTTCAGGACAAGCCTTAGGAGGACACAAGAGATCTCATATGTCAGGTTCTGGTGGTGGTTCTTCTTCTGAGATTAGGAACTGTCAGAAAATTCTGATTCAGGAATCATCAGTAGTTCCTGAAATTAGGGGTTTTCTTGATCTGAATCTTCCTGCTGCTGCTGCTGCTACTACTGAGGAGGAAAGTAAGAGGCCATGGTGGATAGTACAAGGAAACAATCACAATCAGGAGGCACTGGTAGGCCTTAATGTCTAA 1689 0.4002 MEEEDLQEFIINKNTNITKQHVCKFCSKSFPCGRSLGGHMRSHVIAASASDSADNNNNNNEKEKPPPLSSSSSQEHNNNSNTGYGLRENPKKTWRISDNSTVNEEEDTLFSIHDNKLCKDCGKGFPSWKALFGHMKRHSSEKLGQDSCMVKLVMDSQSDNEATAPSRRTRSKRRTRRYMVASTTTTTTTTTTTTTSSLSEVEQEQEEVAMSLMMLSRDVGNWRGIQNSHNNNNEFGHHCFGMIRSCSSVRTNLVSRIDSKMKHNTTLNDESLVGDSVSKGKSSNNSEFLVTNKTGFGFGFMKSEGALLDDSEAEIGKSRVNGTEQPGLSIKAKVLDSEEELKSDSDFINNKKNSSVKRASEGEFIISKNCSKRGKFECTTCNRIFHSYQALGGHRASHKKIKGCFASTSRIDHQSSDENSFETEKETQLSPETTKKQIMKNNKNNFVESENFVEDEAVVTTTPSKSKVHECPICFKVFASGQALGGHKRSHMSGSGGGSSSEIRNCQKILIQESSVVPEIRGFLDLNLPAAAAATTEEESKRPWWIVQGNNHNQEALVGLNV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2160 562 Pfam C2H2-type zinc finger 468 493 - -
Aev01g2160 562 Pfam C2H2-type zinc finger 376 400 - -
Aev01g2160 562 Pfam C2H2-type zinc finger 118 140 - -
Aev01g2160 562 Pfam C2H2-type zinc finger 21 43 - -
Aev01g2160 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 469 491 IPR013087 -
Aev01g2160 562 MobiDBLite consensus disorder prediction 156 175 - -
Aev01g2160 562 SMART c2h2final6 116 138 IPR013087 -
Aev01g2160 562 SMART c2h2final6 469 491 IPR013087 -
Aev01g2160 562 SMART c2h2final6 376 398 IPR013087 -
Aev01g2160 562 SMART c2h2final6 21 43 IPR013087 -
Aev01g2160 562 MobiDBLite consensus disorder prediction 49 93 - -
Aev01g2160 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 43 IPR013087 -
Aev01g2160 562 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Aev01g2160 562 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Aev01g2160 562 SUPERFAMILY beta-beta-alpha zinc fingers 19 138 IPR036236 -
Aev01g2160 562 ProSitePatterns Zinc finger C2H2 type domain signature. 471 491 IPR013087 -
Aev01g2160 562 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 18 560 - -
Aev01g2160 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 376 403 IPR013087 -
Aev01g2160 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Aev01g2160 562 Gene3D Classic Zinc Finger 373 491 - -
Aev01g2160 562 SUPERFAMILY beta-beta-alpha zinc fingers 376 491 IPR036236 -
Aev01g2160 562 ProSitePatterns Zinc finger C2H2 type domain signature. 378 398 IPR013087 -
Aev01g2160 562 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 560 - -
Aev01g2160 562 MobiDBLite consensus disorder prediction 49 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2160 Aev-Chr1 25914054 25915742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2160 368 530 C2H2 Transcription Factor Family AT2G45120 39.877 9.72e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev01g2160 zf-C2H2_6 2.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2160 - - gmx:102666705 364.77