Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2133 ATGGGAAGAGTTAAGCTAAAGATAAAGAAATTGGAGAGCACAAGCAACCGGCAAGTGACATATTCAAAGCGGAAAAGTGGAATTTTGAAGAAAGCAAAGGAATTATCAATACTATGTGACATAGACATTGTCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGCAACATTGAGGAGGTCATTGCGAAATTCGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAACTGGAAAGTCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGACCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACAGTGGAGGAATTAACTCAACAAGTGAGGGTTTTACAATCTCAGATTGCAGAAGTACATCAGAGACTGAGCTATTGGGGTAACGTTGACAAGATCAATAACTTGGAACACCTTAGGCAAATGGAGGACTCGCTCAAGGAATCAATCAATCGAGTGTGTATACAGAAGGAAACTTTTGGAAAGCACCAACTAATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGAATTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCACTGTCTTGGCTTTTGAATAGCGATAATCATCAGTTGATGTTGCCCAATGAACCAAAATATCTGCCATATAGTGATAATCCCAATAGAGATGCCGAGTGCTCCACTGACGTTTCGATCCCCGGATATTCTGGTTATATCAGCAACACAAAACTCGAGAGCTCTCCTCAAGTCCCTACTTTAGGTCAGGGAGGAGGTGGTGGTGGTGGTGGTGCCTTGAACGAGATGAACGGAACCACATGCTTAAATGTACAACGTTGTGAGCAATTTTCATACCCTCCTCCCCCACCTGATAACGAGGAAGCGAAACATCAACAAACGATGAACAATAAACTGAATACTGTGGATTACCAAGTACACAACAGCTTCGATTTGCCAAGATCCATGTTTGAAAATGGACACCACCAGTTCTGGAACTCTGCTTCCGGTCCCTGTGGGGTTGCCATGTATAATGAGAATGGCTACCATAGGGTAAGCAGCAGCAATCCTTTTCCATTCGACTAG 1110 0.4279 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTQQVRVLQSQIAEVHQRLSYWGNVDKINNLEHLRQMEDSLKESINRVCIQKETFGKHQLISLECANQLQEGMNLPLMMAGLQENQPLSWLLNSDNHQLMLPNEPKYLPYSDNPNRDAECSTDVSIPGYSGYISNTKLESSPQVPTLGQGGGGGGGGALNEMNGTTCLNVQRCEQFSYPPPPPDNEEAKHQQTMNNKLNTVDYQVHNSFDLPRSMFENGHHQFWNSASGPCGVAMYNENGYHRVSSSNPFPFD* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2133 369 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev01g2133 369 Coils Coil 77 97 - -
Aev01g2133 369 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 Coils Coil 114 134 - -
Aev01g2133 369 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Aev01g2133 369 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Aev01g2133 369 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 360 - -
Aev01g2133 369 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev01g2133 369 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2133 Aev-Chr1 25702459 25705294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2133 1 265 Type I MADS-box Gene Family AT2G03060 52.555 6.82e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g2133 SRF-TF 3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2133 - - adu:107468091 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2133 01 25702459 25705294 Aev01g2133 01 25702459 25705294 ECH