Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2130 ATGGCTTCACTCTCCACCCTAACCCAACCCCAATTCTCAAACCTAACAACCGCCATCATCTCCGCCACAAACCACCAGAACCGCCGCCTCACCACCGTCCTCTCCTCCCCAACCCTCTTCTCTCTAACCCTCCACCACCTCCACACACTCTCCCTCTCCCAAAAATCCCTCCTCATCTCACGCCACCTCCTCTCATCACTCCACACTCTCACCCTCCACCACACAGAACCGCCGCCACCGCCACCGTCACTATCCACTTTAATCGTAAAACAACGCGACCTCGACGCGGTCCTTCTCCTCCTCCTATTCTGCGAGACGCACAATCACAATCCGAAGCTTCTAGAAGCACCGTTCTCCCAATGGAGGGCGGAATTGAGCAATCTGTTATTGCAAAAGTTGTTGAGCGTAACGGTTTCTTGTGAAGGGACCACAATCGTGATCGGTTACTTGGAGAACATTGCGCGCTGCAGGAGGCTTGTGGGTGCGTTGGGTTCTGGAGGAGGAGGGGGGAATAATAAGGAGGTTGGGGAGGTGGCGGCGTCGGCGGCGGCGGTGGTGGCGTTGCCGGCGGTGGAGGTGGCGGTGGGAGGGAGGGAGTGCGTGATTTGCAAGGAGGAGATGCGAGTGGGAAGGGACGTGTGCGAGTTGCCTTGTAAGCACTCGTTTCATTGGATCTGTATATTGCCCTGGCTAGGCAAGAGGAACACCTGTCCTTCTTGCAGGTTCAGGTTGCCGTCCGATCATGTTTTTGGGGAGATCCAACGGCTCTGGGACTTCTGGTAA 783 0.5632 MASLSTLTQPQFSNLTTAIISATNHQNRRLTTVLSSPTLFSLTLHHLHTLSLSQKSLLISRHLLSSLHTLTLHHTEPPPPPPSLSTLIVKQRDLDAVLLLLLFCETHNHNPKLLEAPFSQWRAELSNLLLQKLLSVTVSCEGTTIVIGYLENIARCRRLVGALGSGGGGGNNKEVGEVAASAAAVVALPAVEVAVGGRECVICKEEMRVGRDVCELPCKHSFHWICILPWLGKRNTCPSCRFRLPSDHVFGEIQRLWDFW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2130 260 SMART ring_2 200 240 IPR001841 -
Aev01g2130 260 Pfam Ring finger domain 199 241 IPR001841 -
Aev01g2130 260 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Aev01g2130 260 SUPERFAMILY RING/U-box 196 246 - -
Aev01g2130 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 258 - -
Aev01g2130 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 247 IPR013083 -
Aev01g2130 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2130 Aev-Chr1 25683364 25684146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2130 1 259 C3H Transcription Factor Family AT5G02750 44.815 1.84e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2130 - - pvu:PHAVU_007G161400g 245.358