Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2108 ATGGTGATGGTGAAGAAGTGGGATGGGAGGAGGGTGAGGATACTGGTGGCAAATGTGGAAGGAGGCACCAGAGAGCGGAAGCAGAGCTCTGAAGCTGCAGCCATGGTGCACGTTTCGTTTTACCGCAACTATGGGAAGACATTCAAGAAGCCGCGTCGTCCCTACGAGAAGGAGCGTTTAGACGCGGAGCTGAAGCTTGTTGGTGAGTACGGGCTTCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCACTCAGCAGGATCCGTAACAACGCAAGGAACCTTCTGACTCTGGATGAGAAGAACCCTCGCCGGATCTTCGAGGGTGAGGCTCTGCTCCGAAGGATGTTCCGTTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTATGTGTTGGCTCTCACCGTTGAGAACTTCCTTGAGCGCCGCCTCCAGACTCTCGTCTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCTAGGGTTCTCATCAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTGGTGAACATCCCATCATTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTCTCACTCACAAGTCCACTCGGCGGTGGCCGTCCCGGAAGAGTGAAGAGAAAGAACCTCAGGGCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGAGATGAGGAGGATGAAGATTAA 696 0.5474 MVMVKKWDGRRVRILVANVEGGTRERKQSSEAAAMVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLRAAAKKAAGGDGDEEDED* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2108 231 ProSiteProfiles S4 RNA-binding domain profile. 143 217 - -
Aev01g2108 231 CDD S4 143 187 - -
Aev01g2108 231 ProSitePatterns Ribosomal protein S4 signature. 141 165 IPR018079 GO:0019843
Aev01g2108 231 Gene3D - 142 198 IPR036986 GO:0003723
Aev01g2108 231 SUPERFAMILY Alpha-L RNA-binding motif 46 193 - -
Aev01g2108 231 TIGRFAM uS4_arch: ribosomal protein uS4 44 200 IPR005710 GO:0003735|GO:0006412|GO:0015935
Aev01g2108 231 SMART s4_6 143 214 IPR002942 GO:0003723
Aev01g2108 231 Pfam Ribosomal protein S4/S9 N-terminal domain 42 142 IPR001912 GO:0019843
Aev01g2108 231 MobiDBLite consensus disorder prediction 201 231 - -
Aev01g2108 231 PANTHER 30S 40S RIBOSOMAL PROTEIN 39 231 IPR022801 -
Aev01g2108 231 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 39 231 - -
Aev01g2108 231 SMART Ribosomal_S4_2 42 142 IPR001912 GO:0019843
Aev01g2108 231 Pfam S4 domain 143 186 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2108 Aev-Chr1 25550426 25552432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2108 35 221 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 3.37e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2108 K02997 - gmx:100305663 358.992