Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2095 ATGATTGATAGAATGGAAGCTTACATGCTTAGATTGTTATTCATATGTTGTGTGTTATGTGTTGGTGTGTTTCCAATATCATTGAAAGGTAATATAGGTGAATTTGACCAAGTGTGGCAACAAAGGTCTGAGGAAGCCAAAAAAAGAACTCAAGAGGCTTTCAAGCCAAACCCTGATCAAGTTACTTCTGATTTCAACCAACATGTCAACCAAGCTCTAAAAGGCTCAAATACCACAAGGAGGGGTTTATCCAAATACAGTGGTCCATGCATGTCAACAAACCCCATTGACAGTTGCTGGAGATGTGACCCCAATTGGGCTAACAACAGAATGAAGCTAGCAGATTGTGCTCTTGGCTTTGGTCAAGGCACAACAGGTGGAAAAGGTGGAAAAATTTATACTGTCACTGACCCTTCTGATAATGACCTTCTAAATCCAAAACCCGGTACTCTGAGATTTGCAGTGATTCAAAAGGAACCACTTTGGATCATCTTTGCACATGACATGACCATTAGATTAAGTGGAGAGCTTATGTTTGCTGATGACAAGACAATTGATGCTCGTGGTGCCAATGTGCATATAAGCAATGGTGCTCAAATTACTCTGCAGTATATAAAGAATGTAATCATTCATGGTCTTCATGTTCATGATATCAAGAAAAGTAATGGTGGACTCATTAGGGACTCTGTTAAACACTATGGACTTAGGACTCAAAGTGATGGTGATGGAATTTCATTGTTTGGAGCTACTAATGTTTGGATAGATCATGTTTCTTTGTCTAATTGTGATGATGGTCTTATTGATGCTATTGAAGGATCAACAGCTATTACTGTCTCCAACTGCCACTTTACACATCATAATGAGGTGATGTTACTTGGTGCAAGTGATGCATTCTCAGGGGATCAACTGATGCAAGTAACATTGGCTTTCAACCATTTTGGGAAAGGGTTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTTGTCCATATTGTCAACAATGACTACACTCATTGGCTTATGTATGCCGTTGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGCTTCATCGCTCCTCCAAACCCAGCTGCAAAAGAGGTGACCAAGAGGGACTATGCTCCTCAAAGTGTGTGGAAAGATTGGGATTGGAGTTCAGAGGGTGATTTAATGCTGAATGGAGCTTTCTTCACTCAGTCTGGGAAAAAGGCTAAAAACCCTTCCAAGACACAGCTCATCAGTGCAAAGCCTGGAACATTTACTGCAACCCTCACTCGCTTTGCAGGTCCTCTTAAATGTGTCATAAACAAGCCATGTTGA 1326 0.4186 MIDRMEAYMLRLLFICCVLCVGVFPISLKGNIGEFDQVWQQRSEEAKKRTQEAFKPNPDQVTSDFNQHVNQALKGSNTTRRGLSKYSGPCMSTNPIDSCWRCDPNWANNRMKLADCALGFGQGTTGGKGGKIYTVTDPSDNDLLNPKPGTLRFAVIQKEPLWIIFAHDMTIRLSGELMFADDKTIDARGANVHISNGAQITLQYIKNVIIHGLHVHDIKKSNGGLIRDSVKHYGLRTQSDGDGISLFGATNVWIDHVSLSNCDDGLIDAIEGSTAITVSNCHFTHHNEVMLLGASDAFSGDQLMQVTLAFNHFGKGLVQRMPRCRWGFVHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPQSVWKDWDWSSEGDLMLNGAFFTQSGKKAKNPSKTQLISAKPGTFTATLTRFAGPLKCVINKPC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2095 441 Pfam Pectate lyase, N terminus 31 83 IPR007524 GO:0030570
Aev01g2095 441 SUPERFAMILY Pectin lyase-like 85 435 IPR011050 -
Aev01g2095 441 SMART amb_all 168 365 IPR002022 -
Aev01g2095 441 Pfam Pectate lyase 185 359 IPR002022 -
Aev01g2095 441 PANTHER PECTATE LYASE 18-RELATED 11 441 IPR045032 GO:0030570
Aev01g2095 441 PANTHER PECTATE LYASE 11 441 - -
Aev01g2095 441 Gene3D - 93 434 IPR012334 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Aev01g2095 441 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2095 Aev-Chr1 25470416 25472680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2095 11 441 Polysaccharide Lyase AT3G01270 54.526 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2095 K01728 - csv:101218812 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2095 01 25470416 25472680 Aev01g2095 01 25470416 25472680 ECH