Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2078 ATGGACGGCGGCGATCCTTCGCTATCCGATAACGATGAGGAGGAAAACGACTTGTCGTCGGACATTCTGTCTCGAGTTCGACTCGTTGACGCTCCGATATTGCTCTTCGTTTGCTTCCATAACGCTCTGCGCTCTGAGCTCCGTCAGCTCCGTCGTTTGGCGGAAACGACGTCGTTGGAGGAGTTGCAACCTGAACAGTGCCGAGAAGTGATTCTTAAGCTCCAGCGACGATTCCGGTTTCTTAAACTCGCTCTCAAGTATCATTGTGCTGCGGAAGACGAGATTATCTTCCTTGCACTGGATACACATGTGAAAAATGTGGTATGTACATATTCCCTTGAACACAACACCACCAATGACCTCTTTGATTCTATCTTTCACTTCTTGGATGAGTTGGTGGGTCTTAATAAGAACATTTCCAAGCTGTTCCAAGAACTTGTGTACTGCATCGGCATCTTGCAAACCTCCATTTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATCTACTAAAGAACAGGCTTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTGTAATGTTGCTGGAGGAATTTTTGCCATGGATGGTATCCTCCCTTTCTGCAGAAAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAACAACACTGCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAAAAACAAAATCTTCACTGGGGCCTACTTTCAGAGAGAAGATATTCAAGGTGTTGATGGATCCCTCCATATAACAAAATCATTTAGATTGGGTTCTAACAATAGGAACTCCAAAGAAATTTCAAGTTTGATGAAATCGAATGGCCTAGGAAACGAAGATGGGTTCACCCAGGTTAATGTTCTTCACCTTTGGCAAGATGCCATCAAGAAAGATTTGGAAGAAATTCTGAAAGAACTTTATCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGAATCAATTCTTATCCAAGTAAAATTTTTTGTTGATGTCCTCATGTTCTACAGCAATGCGCAGAAAAAATTCTTCCATCCAATATTGCATAAACTTGCACATCACTGGTTGGCCAAGCCTAATGAACAATTGGTTGGTGTAAGTCACATTGAAGAGTTACAGCAGCTGTTATTCTATAACTCAGAAAGTGGAATGTCTTTGTCTAAATTCATAGAGAAGCTTTGCCGAGAACTTGAATCATTTGTATTGGGACTCAACATACAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGTCATTAGAAAGAATTGCGGCAATTGGGTGCAAGAGAGACTTCTGAGCTTGAGTCTGTATATGATGCCACTAGGGTTATTAAAGTGTGTTATAACTTGGTTTTCAGTTCACTTGTCTGAAAATGAATCCAGGTCCATTCTCGACTTCATAAAGAAAGGAGATCATTTTGTCTGTAAAGATTTTGCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCATTTGAAAAATTTCGAGAGGACTTGCACCGTATGTTCAAAAGCAGATACTCTTTTGCACCTGAGAAAATTAAGGAAGCTCCTGGTTTTTCTTTCTCAAAATCTGACAACCAGCCTCATAAGGTCTCTGGCAAGAATTGTTTATCCTATTCCTCATCTTCTGGCAACATGGAAAGCAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTCCCAACCACAGTTATGAAGCTACATCAGCATCCAAGATTTCATGCAGCAAATAGTTCTAGCTCCTTTCTTGATGATCCAAAACCAATTGACCTAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGACTACCTGGTTCTTGGCTCAGCTCAGTTAGAAGAAAATGCTGAGTTACTTGTGGATTTCCATAAGAGATTCCATCTCATATTCTTTCTACATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTTCCAGCCCTGGAGGCAAGTGGTAAACTCAAAAACATCAGCCATGCCTACACCTTTGATCACAAAATTGAAGTTGAGCACTTCAATAAAATATCCCGCGTACTTGATAAGATGTCTAAATTACATATTTCAGTCTCAGCTGTCGATTCAACTATTGGGGAGAACAGAATGTTAAGGCATCATCATCTATGCAAGAAGCTGCAAGAAATGTGCAAATCTATGCATAAATCACTTTCTGGCCATATTGACCGTGAGGAAGTTGAAATTTGGCATTTAATTAGAGAATCCTTCTCGAGTCAGGAGCAAGGGAAGATCATAGGGTGCATGCTGGGAAGAATAAAAGCAGAGATATTACAAGATATGATTCCTTGGGTAATGGCATCTTTAACACAGAAAGAACAGCATGTTTTAATGTTCTTATGGTCCATGGCTACAAAAAATACAATGTTCCATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTATAGCTAAGGCAGCAGAGGGAACAAACAATGCCCCTATTCAGACTTTAGAACCATTGGAGATTATATCCAAATACTTATCTGAAGAAGTTCTTGATGAATTACAAGAAGAATCCTCTTCCAACAAAAGCATGAATTGTTTGAAGAAGGATCATATTGGAAATAATGCTGAGCTGTCTGACAATTTTGATGGCAAAGTTAAGGTTCAAACTGCAGAGCAAAATAATAATGAATTTTCAAAATGCACAAGCCACTTTCATGATAATAAAAAACATGCTTCCGATGAAGTAACGAAAGATGTCACAAGTCCAATAAATAAAGATCTATCTTTTCAATATCCTCACAAATCCAAGCATTATGACCGACTTCTGAAACTCAGTCAAGATGATCTGGAGAAGGCAATAAGAAGGGTTTCTCGTGACTCTTCCCTGGATCCTCGGAAGAAGTCACACATAATACAGAACCTGATAATGAGCCGCTGGATTGTTAGACAGAAGATCTCTTTTACAGAAGCCAATGTCAAAAGCGAGGGGCAGGAATTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCAAACAAATCTATGGATGCAAACATTACAGGAGAAATTGTAAGCTTCTGGCCCCTTGTTGCAACCAACTTCATACTTGCATTCATTGCCATAATGAGGAATCGGACCATTCAATTGACAGGAACTCTATCACAAAGATGATGTGCATGAAGTGCTTGATGATTCAACCAATTGGTGCCACATGCTCAACAGTTTCTTGTAACTTAACCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGATATTTACCACTGCCCCTATTGTAACCTTTGCCGAGTTGGAAAGGGCTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCCTGCATGTCTCGTTCTCTTATGATACATGCATGCAGGGAGAAACATTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGTTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCGACATGTTTTCAGGAATATACCTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTTTATTTTAGGATGTTAGATGCTTTGTTGGCTGAAGAAAAAGTTTCTGATGAGCTTTCTGGTCAAATTCGGGTTATATTATGTAATGACTGCGAAAAGAAAGGAACAGCTCCCTTCCACTGGCGTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTTATATGA 3780 0.3966 MDGGDPSLSDNDEEENDLSSDILSRVRLVDAPILLFVCFHNALRSELRQLRRLAETTSLEELQPEQCREVILKLQRRFRFLKLALKYHCAAEDEIIFLALDTHVKNVVCTYSLEHNTTNDLFDSIFHFLDELVGLNKNISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLLMQKLSTKEQASLVWQFICSVPVMLLEEFLPWMVSSLSAEKQAEVTQCFNEIAPMETTLQEVLVSWIGSKNKIFTGAYFQREDIQGVDGSLHITKSFRLGSNNRNSKEISSLMKSNGLGNEDGFTQVNVLHLWQDAIKKDLEEILKELYLLRKSSCFQNLESILIQVKFFVDVLMFYSNAQKKFFHPILHKLAHHWLAKPNEQLVGVSHIEELQQLLFYNSESGMSLSKFIEKLCRELESFVLGLNIQFAFQETEVFPVIRKNCGNWVQERLLSLSLYMMPLGLLKCVITWFSVHLSENESRSILDFIKKGDHFVCKDFASLLHEWFRIGYSGKTSFEKFREDLHRMFKSRYSFAPEKIKEAPGFSFSKSDNQPHKVSGKNCLSYSSSSGNMESKYETPYSTGINLHIFFPTTVMKLHQHPRFHAANSSSSFLDDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEENAELLVDFHKRFHLIFFLHQIHSDAEDEIVFPALEASGKLKNISHAYTFDHKIEVEHFNKISRVLDKMSKLHISVSAVDSTIGENRMLRHHHLCKKLQEMCKSMHKSLSGHIDREEVEIWHLIRESFSSQEQGKIIGCMLGRIKAEILQDMIPWVMASLTQKEQHVLMFLWSMATKNTMFHEWLGEWWDGYSIAKAAEGTNNAPIQTLEPLEIISKYLSEEVLDELQEESSSNKSMNCLKKDHIGNNAELSDNFDGKVKVQTAEQNNNEFSKCTSHFHDNKKHASDEVTKDVTSPINKDLSFQYPHKSKHYDRLLKLSQDDLEKAIRRVSRDSSLDPRKKSHIIQNLIMSRWIVRQKISFTEANVKSEGQEFPGKHPSYRDPLKQIYGCKHYRRNCKLLAPCCNQLHTCIHCHNEESDHSIDRNSITKMMCMKCLMIQPIGATCSTVSCNLTMAKYYCRICKLFDDERDIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHACREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKVSDELSGQIRVILCNDCEKKGTAPFHWRYHKCPYCGSYNTRVI* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2078 1259 Pfam CHY zinc finger 1025 1099 IPR008913 GO:0008270
Aev01g2078 1259 SUPERFAMILY RING/U-box 1152 1203 - -
Aev01g2078 1259 CDD Hr-like 39 170 - -
Aev01g2078 1259 Pfam Ring finger domain 1151 1194 IPR001841 -
Aev01g2078 1259 Pfam Hemerythrin HHE cation binding domain 40 172 IPR012312 -
Aev01g2078 1259 Gene3D nmb1532 protein domain like 605 776 - -
Aev01g2078 1259 Gene3D nmb1532 protein domain like 31 190 - -
Aev01g2078 1259 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 1259 - -
Aev01g2078 1259 Coils Coil 40 60 - -
Aev01g2078 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1146 1197 IPR013083 -
Aev01g2078 1259 SMART ring_2 1153 1194 IPR001841 -
Aev01g2078 1259 CDD RING-H2_Pirh2 1152 1195 - -
Aev01g2078 1259 ProSiteProfiles Zinc finger CTCHY-type profile. 1089 1152 IPR017921 -
Aev01g2078 1259 ProSiteProfiles Zinc finger CHY-type profile. 1018 1087 IPR008913 GO:0008270
Aev01g2078 1259 Gene3D - 1225 1259 - -
Aev01g2078 1259 SUPERFAMILY CHY zinc finger-like 1016 1082 IPR037274 GO:0008270
Aev01g2078 1259 ProSiteProfiles Zinc finger RING-type profile. 1153 1195 IPR001841 -
Aev01g2078 1259 CDD Hr-like 611 756 - -
Aev01g2078 1259 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 23 1259 - -
Aev01g2078 1259 SUPERFAMILY Zinc hairpin stack 1090 1140 IPR037275 -
Aev01g2078 1259 Pfam Zinc-ribbon 1200 1257 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2078 Aev-Chr1 25323706 25332175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2078 31 852 C2H2 Transcription Factor Family AT3G18290 30.942 1.14e-112 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2078 K16276 - gmx:100802706 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2078 01 25323706 25332175 Aev01g2078 01 25323706 25332175 ECH