Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2055 ATGGCTTCCTCTTCAGATCCCTTTTCTGCTTCCACCCACCCTACCATCTACAACCGCAAGCAAAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGACGACGTTCACTTGATCGGCCTCGACGATGCCGCCACCCGATTAGGTGTGGAAAGAAGACGGATCTATGATATAGTCAACGTTCTTGAGAGCATCGGAGTGCTTTCAAGAAAGGCCAAGAATCAGTACACATGGAAAGGATTTGCTGCCATACCCGCAGCTCTGCAGGAGCTCAAGGGTGAGGGTTTAAGGTTGAATCCCTATGCTTTTGAGGGCGGTAGTGACGGAGCAAAAGTGTCCGATGATGAGGATGATGCAGAATCATTTTCTGGAAGTCAAAACGACAAGTCCAATTCAAATTCTTCTACACTTCCCAAATCTCTCAAGACTGAAAATCGAAGGGAAAAATCTCTGGCGCTGCTTACACAGAATTTTGTGAAGCTCTTTGTCTGCTCCAATATAGAAATGATCTCACTTGACGAGGCAGCAAAGTTGTTGCTTGGGGATGCACAAAATTCATCAATAATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTGCTTTCCTCCATGAGCCTTATTGAGAAGACCCATACCACAGATAGCAGAAAACCAGCATTCAAATGGCTAGGCTTGAGCGGGAAGACACCGAACGAGTCTCTTCATAATTCAAATAATGTGAGCGCGAGCGAGTCGAGGAAAAGGGCGTTTGGAAGCGATGTAACAAACATCAGTTTCGAGAGGAACACGATGAACTTATTCTCGAACGGGGACTTGAGCAACACCCCAAATAAGAAGCCAAGGAAAGTGGAAAATGATAGTGGCCATGCTCAGGCAGCAGATACAAGCATCAGCAGCTTTCAGGCTTCAAGGAGTTACCAGTTTGGTCCTTTTGCTCCATCCTATGTGCCCAACGTAGGAGCATCCGAGAATAGTAATGTGAAGCAGGTGCATGATTGGGATAGTCTTGCAACTGAACATCGTCCTCAGTATCAAAACCAAGCTGTGAAAGAACTGTTCTCGCATTACATGGAAGCATGGAAATCGTGGTACTCAGAAGTTGCTGGGAAGAGACCAATACAGAGTTTGTAA 1149 0.4552 MASSSDPFSASTHPTIYNRKQKSLGLLCTNFLSLYNRDDVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPAALQELKGEGLRLNPYAFEGGSDGAKVSDDEDDAESFSGSQNDKSNSNSSTLPKSLKTENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGDAQNSSIMRTKVRRLYDIANVLSSMSLIEKTHTTDSRKPAFKWLGLSGKTPNESLHNSNNVSASESRKRAFGSDVTNISFERNTMNLFSNGDLSNTPNKKPRKVENDSGHAQAADTSISSFQASRSYQFGPFAPSYVPNVGASENSNVKQVHDWDSLATEHRPQYQNQAVKELFSHYMEAWKSWYSEVAGKRPIQSL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2055 382 Gene3D - 13 86 IPR036388 -
Aev01g2055 382 Gene3D - 145 232 IPR036388 -
Aev01g2055 382 SUPERFAMILY "Winged helix" DNA-binding domain 152 231 IPR036390 -
Aev01g2055 382 PANTHER TRANSCRIPTION FACTOR E2F 9 373 IPR015633 GO:0000978|GO:0006357
Aev01g2055 382 MobiDBLite consensus disorder prediction 128 144 - -
Aev01g2055 382 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Aev01g2055 382 MobiDBLite consensus disorder prediction 112 147 - -
Aev01g2055 382 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Aev01g2055 382 Pfam E2F/DP family winged-helix DNA-binding domain 152 230 IPR003316 GO:0005667|GO:0006355
Aev01g2055 382 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 9 373 - -
Aev01g2055 382 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Aev01g2055 382 SMART E2F_TDP_2 150 230 IPR003316 GO:0005667|GO:0006355
Aev01g2055 382 MobiDBLite consensus disorder prediction 272 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2055 Aev-Chr1 25151472 25153937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2055 1 90 E2F-DP Transcription Factor Family AT3G48160 33.962 5.93e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aev01g2055 E2F_TDP 3.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2055 K09391 - gmx:100795252 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2055 01 25151472 25153937 Aev01g2055 01 25151472 25153937 ECH
Aev01g2055 01 25151472 25153937 Aev08g2199 08 21184368 21196977 PCT