Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2046 ATGGCCACATTTGGAGGCACAACTCAGAAGTGCACAGTTTGTGAAAAGAAAGTGTATTGGGTGGAAGAGCTCACAGCTGACAACAAAGTCTATCACAAGTTTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGAGTTCTATATTGTAAGCCTCATTTTGATCAACTCTTCAAGAAAACTGGCAGCTTGGACAAAAGTTTTGAAGGTGTTCCAAGAATTGCTAGGGTGGAAAGATCTGCTGATCAGATCAGCAAGGTTTCAAGATTGTTTGCTGGAACTCAGGAAAAGTGTGTTGGTTGTAAGAAGATAGTTTATCCCATTGAGAAGGTGGGTGTTGATGGGAAATCATACCATAAGGCATGTTTCAGGTGCACACATGGAGGTTGTGTAATAAGCCCATCAAATTATGTGGCACATGAACAATTTCTTTATTGCAAGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGTCATCATGCATGAAAATGCCAATGCTAATGGAATAACTGAGATCACAGCATCTGAGTAA 576 0.4132 MATFGGTTQKCTVCEKKVYWVEELTADNKVYHKFCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGVPRIARVERSADQISKVSRLFAGTQEKCVGCKKIVYPIEKVGVDGKSYHKACFRCTHGGCVISPSNYVAHEQFLYCKHHHTQLFKQKGNFSQLVIMHENANANGITEITASE* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2046 191 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Aev01g2046 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Aev01g2046 191 PANTHER OS06G0237300 PROTEIN 1 174 IPR045268 GO:0051015
Aev01g2046 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Aev01g2046 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Aev01g2046 191 Gene3D Cysteine Rich Protein 6 75 - -
Aev01g2046 191 Gene3D Cysteine Rich Protein 101 171 - -
Aev01g2046 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Aev01g2046 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Aev01g2046 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Aev01g2046 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 174 - -
Aev01g2046 191 Pfam LIM domain 11 65 IPR001781 -
Aev01g2046 191 Pfam LIM domain 107 162 IPR001781 -
Aev01g2046 191 SMART lim_4 106 158 IPR001781 -
Aev01g2046 191 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2046 Aev-Chr1 25074195 25076194 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev01g2046 LIM 5.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2046 K09377 - gmx:100792627 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2046 01 25074195 25076194 Aev01g2046 01 25074195 25076194 ECH
Aev01g2046 01 25074195 25076194 Aev08g2220 08 21373381 21375866 PCT