Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1980 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAACTTAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATCACATAACTAGGTTCGGTGTTGGCTGCTGGAGCTCCGTTCCTAAACTCGCCGGGCTTCAAAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCTCAGCAAGAGGAGGATCTCATTATCAGTCTTCATGAAGTCCTCGGAAATAGGTGGGCTCAGATTTCAGCACAGTTACCGGGGAGAACAGATAATGAGATCAAGAACTTCTGGAATTCATGCTTGAAGAAGAAGCTACTGAAACAAGGGATTGACCCTGCAACACACAAGCCGCTAACAGAACCTCATGATCATGCAGCAGCAGTAATAAAAGAAGAGAATAGCAAGAAGAACACTACAGAGACACCAATACCATTCTCTTCTCATCAAGGTCCTTCTTCTGCAGCAGCACTTCTAATAGCCGATTCAAGTTACTATGATGGAGGGATCATATCATCAGAACCTTCTAGAGACATTTTCATGACAAAGCCACAAGCATTATTGGACCCTTTATTATCCTTCTATGATTCCCAAATTGGTAGTACTTTTCCTCATCAGCATAATTACCATCATCATCACTTATCTGTAAGTAATGATCATCACTACCAAACAGGGCTTATTAAAGCTTATGATCAGAGCCATCAGCAATTTATTGGATTAACAAATTGTTCTTCACCAAGCTATGGATTCTGCTCAATGCCAAGCCTAACCAATTCAGATCAGGGGGCAGGGCAGGTGTCGGTGGTGACAGAGTTCTCATCAGACAACAACTCTGCCTCCAAAATGAGTTTGATGAACAACAATGAGAATAGTAGTAATCAGGTGAAGGAGAGTTCAAGCAACAGCTCAAACATGAGCAATAATAATAATATTAACAGTAATAATAATTATGCTGCAGGGTTCTCATCATCATCATGGGATGGTGACAACAAATTGGACACTCTGTTTCAGTTCCAAGTGAATGCCATAAAATCAGAGGATTTCACTAGCAGCTATCCTCTCATGTCACTCTCAGAAGATCTAACACAAGAAAATTTTGATGTGTTCCAGCATATATGA 1149 0.4099 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQISAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPATHKPLTEPHDHAAAVIKEENSKKNTTETPIPFSSHQGPSSAAALLIADSSYYDGGIISSEPSRDIFMTKPQALLDPLLSFYDSQIGSTFPHQHNYHHHHLSVSNDHHYQTGLIKAYDQSHQQFIGLTNCSSPSYGFCSMPSLTNSDQGAGQVSVVTEFSSDNNSASKMSLMNNNENSSNQVKESSSNSSNMSNNNNINSNNNYAAGFSSSSWDGDNKLDTLFQFQVNAIKSEDFTSSYPLMSLSEDLTQENFDVFQHI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1980 382 Gene3D - 11 67 - -
Aev01g1980 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aev01g1980 382 PANTHER MYB DOMAIN PROTEIN 55 1 377 - -
Aev01g1980 382 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aev01g1980 382 CDD SANT 70 109 IPR001005 -
Aev01g1980 382 CDD SANT 17 61 IPR001005 -
Aev01g1980 382 MobiDBLite consensus disorder prediction 287 321 - -
Aev01g1980 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aev01g1980 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aev01g1980 382 MobiDBLite consensus disorder prediction 141 161 - -
Aev01g1980 382 SMART sant 66 114 IPR001005 -
Aev01g1980 382 SMART sant 13 63 IPR001005 -
Aev01g1980 382 PANTHER MYB TRANSCRIPTION FACTOR 1 377 - -
Aev01g1980 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aev01g1980 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aev01g1980 382 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aev01g1980 382 Gene3D - 68 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1980 Aev-Chr1 24532801 24534166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1980 1 131 MYB Transcription Factor Family AT4G01680 83.969 6.13e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aev01g1980 Myb_DNA-binding 8.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1980 K09422 - gmx:100811140 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1980 01 24532801 24534166 Aev08g2294 08 22196484 22197687 PCT