Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1975 ATGAACCCCTACGACAACAGATACTCCGACCCCGCATCTTATCGTCACCGTCGCAGTGATCTCGTCGGACCTATGCCGCCACCGGTTCTCGGCCGCGGCCCTCCGGTCCCGTACGGTGCTCCTCCGGTCACTTACGGAGCTCCTGGAGCTGGAAGAGGAGCTCCGAATCCCTTTGGATCCGCACCTGTTAACCCGGTTCCTCCTTTTCTTCCACCTCCTGGAGGATTCAGTGTTGGCCGAGGCGGTGGTTTTGGTGGGGGCAGACCGGGTAACGCTCATGGCGGTGGTAGAAAGGACGACAGAGGTCGTCCTGGTGGTGGTGGAAGAGGTCGCGGGGGAGCTGGTAGAGGCGGTGGAGCCGGTAGAGGTGGTGGAGCCGGTTTTCGAGGAGGAAGAAGTCACGTTGGATCTGGCGGTGGAAGAAGAGGTAGACATGGTGGATCATCTAAGGATGATTTGGATAGGGTTTCTTTACCGAAGCAGGATTTCAGGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGAGCTCTGCTGTTAGGGCCATGTCTGATCACGAAGTCATGCATTATCGTGCAAGTAGAGAGATCACAGTGCAAGGGAACGACGTTCCTAAGCCTGTTAGGATGTTTCACGAGGCTAATTTTCCTGATTACTGCCTTGAGGTGATTGACAAATTGGGTTTTGTTGAGCCAACCGCAATCCAGGCTCAAGGATGGCCTATGGCCCTCAAGGGTAGAGACTTGATTGGCATTGCTGAGACTGGCTCTGGCAAAACATTGGCTTATCTGCTTCCTGCTTTAGTGCATGTCAGTGCACAACCTAGATTGGTACAGGGGGAAGGTCCCATTGTATTAGTTTTAGCACCAACTAGGGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCTAAAATTTGGGTCACGGGCAAATATTAGAAGTACATGTATCTACGGTGGTGCACCAAAGGGACCTCAAATTCGTGACCTTAAAAGGGGTGTTGAGATTGTTATTGCTACACCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCAGACAAACTTGCAGAGAGTAACTTACCTTGTTTTGGATGAAGCTGATCGTATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATAGTAGGCCAGATTCGACCAGATAGACAGACATTATATTGGAGTGCTACATGGCCAAGGGAGGTTGAAACTTTGGCAAGGCAGTTTTTGCGCAACCCATATAAGGTAATTATCGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTCGTAACAGATCTGGAGAAATATAATAGATTGATCAGACTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACCAAAAAGGGATGTGATCAAGTTACAAAACAATTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAGAATCAGGCTGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCCTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGGCAATGCTAAGTTTGCCAGGAATCTGATCAAGATTTTACAAGATGCTGGTCAGATTGTGAGTCCTGCACTTTCCACATTGGCTCGGTCAGCTGGTTCTGGTCAATTTGGATCGGGAGGAGGCTTTCGCTCAAGGGGACGAGGAGGCTATGGCAATCGAGGTTCAATGTCAGGGTCCAATGCCACTCCTCTAGGTTTAAAGAGGCCTTGGCATGGTATGTAG 1902 0.4811 MNPYDNRYSDPASYRHRRSDLVGPMPPPVLGRGPPVPYGAPPVTYGAPGAGRGAPNPFGSAPVNPVPPFLPPPGGFSVGRGGGFGGGRPGNAHGGGRKDDRGRPGGGGRGRGGAGRGGGAGRGGGAGFRGGRSHVGSGGGRRGRHGGSSKDDLDRVSLPKQDFRNLVPFEKNFYVESSAVRAMSDHEVMHYRASREITVQGNDVPKPVRMFHEANFPDYCLEVIDKLGFVEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQQTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPELKANQSINQVVEVVTDLEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHGNAKFARNLIKILQDAGQIVSPALSTLARSAGSGQFGSGGGFRSRGRGGYGNRGSMSGSNATPLGLKRPWHGM* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1975 633 CDD SF2_C_DEAD 428 558 - -
Aev01g1975 633 Gene3D - 182 417 IPR027417 -
Aev01g1975 633 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 361 369 IPR000629 -
Aev01g1975 633 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 209 237 IPR014014 GO:0003724
Aev01g1975 633 MobiDBLite consensus disorder prediction 592 633 - -
Aev01g1975 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 569 IPR027417 -
Aev01g1975 633 Pfam DEAD/DEAH box helicase 233 404 IPR011545 GO:0003676|GO:0005524
Aev01g1975 633 Gene3D - 418 591 IPR027417 -
Aev01g1975 633 SMART ultradead3 228 431 IPR014001 -
Aev01g1975 633 MobiDBLite consensus disorder prediction 60 74 - -
Aev01g1975 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 415 IPR014001 -
Aev01g1975 633 CDD DEADc_DDX5_DDX17 221 415 - -
Aev01g1975 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 588 IPR001650 -
Aev01g1975 633 SMART helicmild6 468 549 IPR001650 -
Aev01g1975 633 MobiDBLite consensus disorder prediction 27 42 - -
Aev01g1975 633 Pfam Helicase conserved C-terminal domain 439 549 IPR001650 -
Aev01g1975 633 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 618 - -
Aev01g1975 633 PANTHER LD32873P 92 618 - -
Aev01g1975 633 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1975 Aev-Chr1 24496355 24500083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1975 196 569 Eukaryotic Initiation Factors Gene Family AT3G19760 35.467 3.48e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1975 K12823 - gmx:100777610 865.529