Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1951 ATGGCAATGGCGGAATCATTCCTTCTATCTCTACCCTCACTCTTCCTCACCAAACCTAAACACCCATTTCCTTATTCCAAGTCACTCAAATTCCAAGTTGCATGCTCCAACTCTTCACTCTTTCCACCCTCTCTTCTTTCCCTCACAACGAAATTGAAAACAACCCAACATTCCCCTATGCTCTCTTTTGTAGCCCAGACATCAGATTGGGCTCAACAACAAGACGAAGGAGAAGAAGAAGAAGAAAGCGAAGGAGAGGGAGAGGGTGGTTTTGAAGAACCATCTGAGGATGCTAAAATCTTTGTTGGGAATTTGCCTTTTGATGTTGACAGCCAGAAGCTCGCCATGCTTTTTGAGACATCTGGGACTGTGGAGATTGCTGAGGTGATTTATAACAGAGCAACTGATAGGAGTCGCGGGTTTGGATTTGTGACCATGAGTACGGTTGAAGAAGCTGACAAGGCTGTGGAGAAGTTCAGTGGCTATGAATTAGATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAGCACAGCCTGAGCGACCACCTCGTGTCCTTGATCCTGCCTTAAGAGTCTATGTCGGCAACTTGCCATGGGACGTTGACAATGTTCGCCTGGAGCAAATCTTTAGCGAACACGGTAAGGTTGAGCGTGCTCAGATAGTCTACGACAGAGAGACTGGTCGATCACGCGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATTAATGGTGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGGAGGTCAATCAGAGTCAATGTTGCTGAGGAGAGGCCTAGGCGTAACTTTTCATCTGAGTGGTAA 843 0.4674 MAMAESFLLSLPSLFLTKPKHPFPYSKSLKFQVACSNSSLFPPSLLSLTTKLKTTQHSPMLSFVAQTSDWAQQQDEGEEEEESEGEGEGGFEEPSEDAKIFVGNLPFDVDSQKLAMLFETSGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADKAVEKFSGYELDGRVLTVNKAAPRGAQPERPPRVLDPALRVYVGNLPWDVDNVRLEQIFSEHGKVERAQIVYDRETGRSRGFGFVTMSSETDINGAIAALDGQSLDGRSIRVNVAEERPRRNFSSEW* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1951 280 CDD RRM_HP0827_like 99 176 - -
Aev01g1951 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Aev01g1951 280 SMART rrm1_1 99 172 IPR000504 GO:0003723
Aev01g1951 280 SMART rrm1_1 193 266 IPR000504 GO:0003723
Aev01g1951 280 PANTHER OS02G0815200 PROTEIN 2 81 - -
Aev01g1951 280 PANTHER OS02G0815200 PROTEIN 81 275 - -
Aev01g1951 280 Gene3D - 180 278 IPR012677 -
Aev01g1951 280 CDD RRM_HP0827_like 193 269 - -
Aev01g1951 280 PANTHER RIBONUCLEOPROTEIN 2 81 - -
Aev01g1951 280 PANTHER RIBONUCLEOPROTEIN 81 275 - -
Aev01g1951 280 MobiDBLite consensus disorder prediction 67 95 - -
Aev01g1951 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Aev01g1951 280 MobiDBLite consensus disorder prediction 73 91 - -
Aev01g1951 280 Gene3D - 64 179 IPR012677 -
Aev01g1951 280 SUPERFAMILY RNA-binding domain, RBD 94 186 IPR035979 GO:0003676
Aev01g1951 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Aev01g1951 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Aev01g1951 280 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1951 Aev-Chr1 24368445 24370678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1951 96 274 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 2.60e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1951 - - gmx:100811487 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1951 01 24368445 24370678 Aev04g1525 04 10990577 10992639 ECH
Aev01g1951 01 24368445 24370678 Aev01g1951 01 24368445 24370678 ECH
Aev01g1951 01 24368445 24370678 Aev08g2339 08 22516677 22518737 PCT